Searched refs:mindicator_snp (Results 1 – 7 of 7) sorted by relevance
/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | vc.h | 109 vector<vector<int>> &mindicator_snp, 121 vector<vector<int>> &mindicator_snp, const gsl_matrix *XWz,
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H A D | param.cpp | 375 mindicator_snp.push_back(indicator_snp); in ReadFiles() 428 mindicator_snp.push_back(indicator_snp); in ReadFiles() 1858 if (mindicator_snp.size() != 0) { in WriteVar() 1859 for (size_t t = 0; t < mindicator_snp.size(); t++) { in WriteVar() 1860 indicator_snp = mindicator_snp[t]; in WriteVar() 2251 indicator_snp = mindicator_snp[t]; in ObtainWeight() 2389 if (mindicator_snp[t][i] == 0) { in UpdateSNPnZ() 2407 mindicator_snp[t][i] = 0; in UpdateSNPnZ() 2436 for (size_t i = 0; i < mindicator_snp[t].size(); i++) { in UpdateSNP() 2437 if (mindicator_snp[t][i] == 0) { in UpdateSNP() [all …]
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H A D | param.h | 291 vector<vector<int>> mindicator_snp; variable
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H A D | gemma_io.h | 150 const vector<vector<int>> &mindicator_snp,
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H A D | vc.cpp | 2442 vector<vector<int>> &mindicator_snp, in MFILEXwz() argument 2460 PlinkXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEXwz() 2463 BimbamXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEXwz() 2693 vector<vector<int>> &mindicator_snp, const gsl_matrix *XWz, in MFILEXtXwz() argument 2710 PlinkXtXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], XWz, in MFILEXtXwz() 2713 BimbamXtXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEXtXwz()
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H A D | gemma.cpp | 2487 cPar.mindicator_snp, vec_cat, w1, z, Xz); in BatchRun() 2490 cPar.mindicator_snp, vec_cat, w1, z, Xz); in BatchRun() 2508 cPar.mindicator_snp, vec_cat, w, z, XWz); in BatchRun() 2511 cPar.mindicator_snp, vec_cat, w, z, XWz); in BatchRun() 2527 cPar.mindicator_snp, XWz, XtXWz); in BatchRun() 2530 cPar.mindicator_snp, XWz, XtXWz); in BatchRun()
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H A D | gemma_io.cpp | 3158 const vector<vector<int>> &mindicator_snp, in MFILEKin() argument 3187 PlinkKin(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEKin() 3191 mindicator_snp[l], mapRS2weight, mapRS2cat, in MFILEKin()
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