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Searched refs:mindicator_snp (Results 1 – 7 of 7) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dvc.h109 vector<vector<int>> &mindicator_snp,
121 vector<vector<int>> &mindicator_snp, const gsl_matrix *XWz,
H A Dparam.cpp375 mindicator_snp.push_back(indicator_snp); in ReadFiles()
428 mindicator_snp.push_back(indicator_snp); in ReadFiles()
1858 if (mindicator_snp.size() != 0) { in WriteVar()
1859 for (size_t t = 0; t < mindicator_snp.size(); t++) { in WriteVar()
1860 indicator_snp = mindicator_snp[t]; in WriteVar()
2251 indicator_snp = mindicator_snp[t]; in ObtainWeight()
2389 if (mindicator_snp[t][i] == 0) { in UpdateSNPnZ()
2407 mindicator_snp[t][i] = 0; in UpdateSNPnZ()
2436 for (size_t i = 0; i < mindicator_snp[t].size(); i++) { in UpdateSNP()
2437 if (mindicator_snp[t][i] == 0) { in UpdateSNP()
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H A Dparam.h291 vector<vector<int>> mindicator_snp; variable
H A Dgemma_io.h150 const vector<vector<int>> &mindicator_snp,
H A Dvc.cpp2442 vector<vector<int>> &mindicator_snp, in MFILEXwz() argument
2460 PlinkXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEXwz()
2463 BimbamXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEXwz()
2693 vector<vector<int>> &mindicator_snp, const gsl_matrix *XWz, in MFILEXtXwz() argument
2710 PlinkXtXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], XWz, in MFILEXtXwz()
2713 BimbamXtXwz(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEXtXwz()
H A Dgemma.cpp2487 cPar.mindicator_snp, vec_cat, w1, z, Xz); in BatchRun()
2490 cPar.mindicator_snp, vec_cat, w1, z, Xz); in BatchRun()
2508 cPar.mindicator_snp, vec_cat, w, z, XWz); in BatchRun()
2511 cPar.mindicator_snp, vec_cat, w, z, XWz); in BatchRun()
2527 cPar.mindicator_snp, XWz, XtXWz); in BatchRun()
2530 cPar.mindicator_snp, XWz, XtXWz); in BatchRun()
H A Dgemma_io.cpp3158 const vector<vector<int>> &mindicator_snp, in MFILEKin() argument
3187 PlinkKin(file_name, display_pace, indicator_idv, mindicator_snp[l], in MFILEKin()
3191 mindicator_snp[l], mapRS2weight, mapRS2cat, in MFILEKin()