| /dports/biology/gcta/gcta_1.26.0_src/ |
| H A D | option.cpp | 97 int mphen = 1, mphen2 = 2, reml_mtd = 0, MaxIter = 100; in option() local
647 mphen = atoi(argv[++i]); in option()
648 cout << "--mpheno " << mphen << endl; in option()
649 if (mphen < 1) throw ("Error: --mpheno should be > 0."); in option()
687 mphen = 1; in option()
690 mphen = mphen_buf[0]; in option()
693 …if (mphen < 1 || mphen2 < 1 || mphen == mphen2) throw ("\nError: --reml-bivar. Invalid input param… in option()
694 cout << "--reml-bivar " << mphen << " " << mphen2 << endl; in option()
1065 …else if (mlma_loco_flag) pter_gcta->mlma_loco(phen_file, qcovar_file, covar_file, mphen, MaxIter, … in option()
1114 …else if (mlma_loco_flag) pter_gcta->mlma_loco(phen_file, qcovar_file, covar_file, mphen, MaxIter, … in option()
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| H A D | bivar_reml.cpp | 15 …ile, string keep_indi_file, string remove_indi_file, string sex_file, int mphen, int mphen2, doubl… in fit_bivar_reml() argument
46 read_phen(phen_file, phen_ID, phen_buf, mphen, mphen2); in fit_bivar_reml()
80 mphen--; in fit_bivar_reml()
85 if (phen_buf[i][mphen] != "NA" && phen_buf[i][mphen] != "-9") n1++; in fit_bivar_reml()
87 ystr1[iter->second] = phen_buf[i][mphen]; in fit_bivar_reml()
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| H A D | est_hsq.cpp | 40 …ng phen_file, vector<string> &phen_ID, vector< vector<string> > &phen_buf, int mphen, int mphen2) { in read_phen() argument
55 if (mphen > phen_num) { in read_phen()
57 … errmsg << "Error: can not find the " << mphen << "th trait in the file [" + phen_file + "]."; in read_phen()
67 if (phen_num > 1) cout << "Trait #" << mphen << " is included for analysis." << endl; in read_phen()
70 mphen--; in read_phen()
85 …if ((vs_buf[mphen] == "-9" || vs_buf[mphen] == "NA") && (vs_buf[mphen2] == "-9" || vs_buf[mphen2] … in read_phen()
87 if (vs_buf[mphen] == "-9" || vs_buf[mphen] == "NA") continue; in read_phen()
202 read_phen(phen_file, phen_ID, phen_buf, mphen); in fit_reml()
247 _y[iter->second] = atof(phen_buf[i][mphen - 1].c_str()); in fit_reml()
1491 read_phen(phen_file, phen_ID, phen_buf, mphen); in HE_reg()
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| H A D | mlm_assoc.cpp | 15 …ct_grm_file, string phen_file, string qcovar_file, string covar_file, int mphen, int MaxIter, vect… in mlma() argument
34 read_phen(phen_file, phen_ID, phen_buf, mphen); in mlma()
88 _y[iter->second]=atof(phen_buf[i][mphen-1].c_str()); in mlma()
346 void gcta::mlma_loco(string phen_file, string qcovar_file, string covar_file, int mphen, int MaxIte… in mlma_loco() argument
359 read_phen(phen_file, phen_ID, phen_buf, mphen); in mlma_loco()
420 _y[iter->second]=atof(phen_buf[i][mphen-1].c_str()); in mlma_loco()
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| H A D | gcta.h | 109 …ile, string keep_indi_file, string remove_indi_file, string sex_file, int mphen, double grm_cutoff…
110 …_reg(string grm_file, string phen_file, string keep_indi_file, string remove_indi_file, int mphen);
120 …ile, string keep_indi_file, string remove_indi_file, string sex_file, int mphen, int mphen2, doubl…
157 …ct_grm_file, string phen_file, string qcovar_file, string covar_file, int mphen, int MaxIter, vect…
158 …void mlma_loco(string phen_file, string qcovar_file, string covar_file, int mphen, int MaxIter, ve…
233 …phen_file, vector<string> &phen_ID, vector< vector<string> > &phen_buf, int mphen, int mphen2 = 0);
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| /dports/devel/plan9port/plan9port-1f098efb7370a0b28306d10681e21883fb1c1507/dict/ |
| H A D | pgw | 679711 wrinkle, MHG. <i>rümphen</i>, OHG. <i>rimpfan</i>, Gr.
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