| /dports/biology/migrate/migrate-3.6.11/src/ |
| H A D | combroyden2.c | 208 boolean multilocus; in estimateParameter() local
222 prepare_broyden (kind, world, &multilocus); in estimateParameter()
226 world->loci, kind, multilocus); in estimateParameter()
229 world->loci, kind, multilocus); in estimateParameter()
323 if (helper->multilocus) in calc_loci_like()
368 if (helper->multilocus) in slow_net_calc_loci_like()
1154 *multilocus = FALSE; in prepare_broyden()
1158 *multilocus = TRUE; in prepare_broyden()
1168 if (multilocus) in multilocus_gamma_adjust()
1207 boolean multilocus) in setup_parameter0_standard() argument
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| H A D | combroyden.h | 64 boolean * multilocus);
72 boolean multilocus);
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| H A D | migrate_mpi.h | 159 boolean multilocus);
183 long kind, boolean multilocus);
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| H A D | world.h | 73 nr_fmt * nr, long Gloci, boolean multilocus);
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| H A D | aic.c | 250 boolean multilocus=FALSE; in akaike_information() local
254 prepare_broyden (kind, world, &multilocus); in akaike_information()
277 world->loci, kind, multilocus); in akaike_information()
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| H A D | world.c | 116 nr_fmt * nr, long Gloci, boolean multilocus);
1237 helper.multilocus = TRUE; in print_alpha_curve()
1269 world->loci, PROFILE, helper.multilocus); in print_alpha_curve()
1391 void create_plot(world_fmt *world, char ***plane, nr_fmt * nr, long Gloci, boolean multilocus) in create_plot() argument
1397 if(multilocus)// accomodates the calc_loci plots and should have no effect on calc_locus plots in create_plot()
1426 if(multilocus) in create_plot()
2971 helper.multilocus=TRUE; in calc_loci_plane()
2973 helper.multilocus= (world->loci>1 ? TRUE : FALSE); in calc_loci_plane()
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| H A D | migration.h | 1334 boolean multilocus; member
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| H A D | lrt.c | 220 helper.multilocus = world->loci == 1 ? FALSE : TRUE; in test_loci_like()
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| H A D | migrate_mpi.c | 3925 boolean multilocus) in setup_parameter0_slowmpi() argument
3930 if (multilocus) in setup_parameter0_slowmpi()
3986 boolean multilocus) in setup_parameter0_mpi() argument
3992 if (multilocus) in setup_parameter0_mpi()
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| H A D | profile.c | 1638 prepare_broyden (PROFILE, world, &helper.multilocus); in find_profilelike()
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| /dports/biology/fluctuate/fluctuate1.4/ |
| H A D | fluc_modellike.h | 53 boolean multilocus);
68 derivlist *d, boolean multilocus);
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| H A D | fluc_modellike.c | 815 boolean multilocus) in init_matrix() argument
823 if (multilocus) { in init_matrix()
1023 derivlist *d, boolean multilocus) in matrixpoint() argument
1051 if (multilocus) lowcus = -1; in matrixpoint()
1076 multilocus); in matrixpoint()
1089 multilocus); in matrixpoint()
1097 multilocus); in matrixpoint()
1628 boolean multilocus; in print_covariance() local
1659 if(lowcus==-1)multilocus=true; in print_covariance()
1660 else multilocus=false; in print_covariance()
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| H A D | fluctuate.doc | 200 each locus is processed, and again for the multilocus estimate if there
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| /dports/biology/recombine/recombine1.41/ |
| H A D | rec_modellike.c | 2211 boolean multilocus; in calc_grad() local
2217 multilocus = ((lowcus == -1) ? TRUE : FALSE); in calc_grad()
2220 grad[0] = ((multilocus) ? in calc_grad()
2223 grad[1] = ((multilocus) ? in calc_grad()
2449 boolean multilocus; in find_thetamax() local
2451 multilocus = ((lowcus == -1) ? TRUE : FALSE); in find_thetamax()
2462 change = ((multilocus) ? in find_thetamax()
2507 boolean multilocus; in find_recmax() local
2509 multilocus = ((lowcus == -1) ? TRUE : FALSE); in find_recmax()
2520 change = ((multilocus) ? in find_recmax()
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| /dports/biology/migrate/migrate-3.6.11/example/ |
| H A D | outfile-bayes-saved-012015 | 383 very accurate. Whith many parameters in a multilocus analysis, it is very common that
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| /dports/biology/migrate/migrate-3.6.11/ |
| H A D | README_PARALLEL_GENERAL | 129 (10) voila, a multilocus outfile in a fraction of
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| H A D | HISTORY | 369 Bayesian method with multilocus-microsatellite data
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| /dports/biology/mrbayes/MrBayes-3.2.7/doc/tutorial/src/ |
| H A D | master_refs.bib | 745 title = {{Inference of population structure using multilocus genotype data}},
2092 title = {{Delimiting species using multilocus data: diagnosing cryptic diversity in the southern ca…
2406 title = {{Bayesian species delimitation using multilocus sequence data}},
2545 title = {{Inference of population structure using multilocus genotype data: linked loci and correla…
3086 title = {{Inference of population structure using multilocus genotype data: dominant markers and nu…
3626 title = {{Bayesian inference of species trees from multilocus data}},
3648 title = {{Divergence time and evolutionary rate estimation with multilocus data}},
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| /dports/biology/emboss/EMBOSS-6.6.0/test/data/structure/ |
| H A D | seqwords.seq | 502 RT Escherichia coli strains inferred from multilocus enzyme
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| /dports/biology/mrbayes/MrBayes-3.2.7/doc/manual/src/ |
| H A D | bayes.bib | 4088 title = {Inference of population structure using multilocus genotype data},
5115 title = {Divergence time and evolutionary rate estimation with multilocus data},
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| /dports/biology/phyml/phyml-3.3.20200621/doc/ |
| H A D | ref.bib | 151 title={Bayesian inference of species trees from multilocus data},
2677 …f genetic distance and coefficient of gene diversity from single-probe multilocus {DNA} fingerprin…
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| /dports/textproc/R-cran-hunspell/hunspell/inst/dict/ |
| H A D | en_GB.dic | 51584 multilocus
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| /dports/editors/texstudio/texstudio-4.1.2/utilities/dictionaries/ |
| H A D | en_GB.dic | 52473 multilocus
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| /dports/textproc/p5-Unicode-Tussle/Unicode-Tussle-1.111/data/ |
| H A D | words.utf8 | 266447 multilocus multilocus ← multi- [comb. form]
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