Searched refs:n2sc (Results 1 – 11 of 11) sorted by relevance
/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | cm_p7_domaindef.c | 136 …esl_vec_FSet(ddef->n2sc, sq->n+1, 0.0); /* ddef->n2sc null2 scores are initialized … in p7_domaindef_GlocalByPosteriorHeuristics() 357 esl_vec_FSet(ddef->n2sc+ireg, Lr, 0.0); /* zero the null2 scores in region */ in glocal_region_trace_ensemble() 380 for (; pos <= ddef->tr->sqfrom[d]; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in glocal_region_trace_ensemble() 383 for (; pos <= ddef->tr->sqto[d]; pos++) ddef->n2sc[ireg+pos-1] += null2[dsq[ireg+pos-1]]; in glocal_region_trace_ensemble() 388 for (; pos <= Lr; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in glocal_region_trace_ensemble() 396 ddef->n2sc[pos] = logf(ddef->n2sc[pos] / (float) ddef->nsamples); in glocal_region_trace_ensemble() 528 ddef->n2sc[pos] = logf(null2[sq->dsq[pos]]); in glocal_rescore_isolated_domain() 532 domcorrection += ddef->n2sc[pos]; /* domcorrection is in units of NATS */ in glocal_rescore_isolated_domain()
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/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | p7_domaindef.c | 80 ddef->n2sc = NULL; in p7_domaindef_Create() 89 ESL_ALLOC(ddef->n2sc, sizeof(float) * (Lalloc+1)); in p7_domaindef_Create() 91 ddef->n2sc[0] = 0.; in p7_domaindef_Create() 159 ESL_RALLOC(ddef->n2sc, p, sizeof(float) * (L+1)); in p7_domaindef_GrowTo() 268 fprintf(ofp, "%d %f\n", i, ddef->n2sc[i]); in p7_domaindef_DumpPosteriors() 291 if (ddef->n2sc != NULL) free(ddef->n2sc); in p7_domaindef_Destroy() 607 esl_vec_FSet(ddef->n2sc+ireg, Lr, 0.0); /* zero the null2 scores in region */ in region_trace_ensemble() 629 for (; pos <= ddef->tr->sqfrom[d]; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble() 635 for (; pos <= Lr; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble() 642 ddef->n2sc[pos] = logf(ddef->n2sc[pos] / (float) ddef->nsamples); in region_trace_ensemble() [all …]
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H A D | hmmer.h | 650 float *n2sc; member
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H A D | p7_pipeline.c | 750 seqbias = esl_vec_FSum(pli->ddef->n2sc, sq->n+1); in p7_Pipeline()
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/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | p7_domaindef.c | 80 ddef->n2sc = NULL; in p7_domaindef_Create() 89 ESL_ALLOC(ddef->n2sc, sizeof(float) * (Lalloc+1)); in p7_domaindef_Create() 91 ddef->n2sc[0] = 0.; in p7_domaindef_Create() 159 ESL_RALLOC(ddef->n2sc, p, sizeof(float) * (L+1)); in p7_domaindef_GrowTo() 268 fprintf(ofp, "%d %f\n", i, ddef->n2sc[i]); in p7_domaindef_DumpPosteriors() 291 if (ddef->n2sc != NULL) free(ddef->n2sc); in p7_domaindef_Destroy() 607 esl_vec_FSet(ddef->n2sc+ireg, Lr, 0.0); /* zero the null2 scores in region */ in region_trace_ensemble() 629 for (; pos <= ddef->tr->sqfrom[d]; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble() 635 for (; pos <= Lr; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble() 642 ddef->n2sc[pos] = logf(ddef->n2sc[pos] / (float) ddef->nsamples); in region_trace_ensemble() [all …]
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H A D | hmmer.h | 650 float *n2sc; member
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H A D | p7_pipeline.c | 750 seqbias = esl_vec_FSum(pli->ddef->n2sc, sq->n+1); in p7_Pipeline()
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/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/ |
H A D | null2.c | 304 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local 317 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main() 318 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main() 320 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main() 325 n2sc[pos] = logf(n2sc[pos] / nsamples); in main() 329 free(n2sc); in main()
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/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/ |
H A D | null2.c | 313 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local 326 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main() 327 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main() 329 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main() 334 n2sc[pos] = logf(n2sc[pos] / nsamples); in main() 338 free(n2sc); in main()
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/dports/biology/hmmer/hmmer-3.3/src/impl_sse/ |
H A D | null2.c | 304 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local 317 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main() 318 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main() 320 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main() 325 n2sc[pos] = logf(n2sc[pos] / nsamples); in main() 329 free(n2sc); in main()
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/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/ |
H A D | null2.c | 313 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local 326 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main() 327 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main() 329 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main() 334 n2sc[pos] = logf(n2sc[pos] / nsamples); in main() 338 free(n2sc); in main()
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