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Searched refs:n2sc (Results 1 – 11 of 11) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/src/
H A Dcm_p7_domaindef.c136 …esl_vec_FSet(ddef->n2sc, sq->n+1, 0.0); /* ddef->n2sc null2 scores are initialized … in p7_domaindef_GlocalByPosteriorHeuristics()
357 esl_vec_FSet(ddef->n2sc+ireg, Lr, 0.0); /* zero the null2 scores in region */ in glocal_region_trace_ensemble()
380 for (; pos <= ddef->tr->sqfrom[d]; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in glocal_region_trace_ensemble()
383 for (; pos <= ddef->tr->sqto[d]; pos++) ddef->n2sc[ireg+pos-1] += null2[dsq[ireg+pos-1]]; in glocal_region_trace_ensemble()
388 for (; pos <= Lr; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in glocal_region_trace_ensemble()
396 ddef->n2sc[pos] = logf(ddef->n2sc[pos] / (float) ddef->nsamples); in glocal_region_trace_ensemble()
528 ddef->n2sc[pos] = logf(null2[sq->dsq[pos]]); in glocal_rescore_isolated_domain()
532 domcorrection += ddef->n2sc[pos]; /* domcorrection is in units of NATS */ in glocal_rescore_isolated_domain()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_domaindef.c80 ddef->n2sc = NULL; in p7_domaindef_Create()
89 ESL_ALLOC(ddef->n2sc, sizeof(float) * (Lalloc+1)); in p7_domaindef_Create()
91 ddef->n2sc[0] = 0.; in p7_domaindef_Create()
159 ESL_RALLOC(ddef->n2sc, p, sizeof(float) * (L+1)); in p7_domaindef_GrowTo()
268 fprintf(ofp, "%d %f\n", i, ddef->n2sc[i]); in p7_domaindef_DumpPosteriors()
291 if (ddef->n2sc != NULL) free(ddef->n2sc); in p7_domaindef_Destroy()
607 esl_vec_FSet(ddef->n2sc+ireg, Lr, 0.0); /* zero the null2 scores in region */ in region_trace_ensemble()
629 for (; pos <= ddef->tr->sqfrom[d]; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble()
635 for (; pos <= Lr; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble()
642 ddef->n2sc[pos] = logf(ddef->n2sc[pos] / (float) ddef->nsamples); in region_trace_ensemble()
[all …]
H A Dhmmer.h650 float *n2sc; member
H A Dp7_pipeline.c750 seqbias = esl_vec_FSum(pli->ddef->n2sc, sq->n+1); in p7_Pipeline()
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_domaindef.c80 ddef->n2sc = NULL; in p7_domaindef_Create()
89 ESL_ALLOC(ddef->n2sc, sizeof(float) * (Lalloc+1)); in p7_domaindef_Create()
91 ddef->n2sc[0] = 0.; in p7_domaindef_Create()
159 ESL_RALLOC(ddef->n2sc, p, sizeof(float) * (L+1)); in p7_domaindef_GrowTo()
268 fprintf(ofp, "%d %f\n", i, ddef->n2sc[i]); in p7_domaindef_DumpPosteriors()
291 if (ddef->n2sc != NULL) free(ddef->n2sc); in p7_domaindef_Destroy()
607 esl_vec_FSet(ddef->n2sc+ireg, Lr, 0.0); /* zero the null2 scores in region */ in region_trace_ensemble()
629 for (; pos <= ddef->tr->sqfrom[d]; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble()
635 for (; pos <= Lr; pos++) ddef->n2sc[ireg+pos-1] += 1.0; in region_trace_ensemble()
642 ddef->n2sc[pos] = logf(ddef->n2sc[pos] / (float) ddef->nsamples); in region_trace_ensemble()
[all …]
H A Dhmmer.h650 float *n2sc; member
H A Dp7_pipeline.c750 seqbias = esl_vec_FSum(pli->ddef->n2sc, sq->n+1); in p7_Pipeline()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/
H A Dnull2.c304 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local
317 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main()
318 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main()
320 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main()
325 n2sc[pos] = logf(n2sc[pos] / nsamples); in main()
329 free(n2sc); in main()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/
H A Dnull2.c313 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local
326 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main()
327 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main()
329 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main()
334 n2sc[pos] = logf(n2sc[pos] / nsamples); in main()
338 free(n2sc); in main()
/dports/biology/hmmer/hmmer-3.3/src/impl_sse/
H A Dnull2.c304 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local
317 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main()
318 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main()
320 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main()
325 n2sc[pos] = logf(n2sc[pos] / nsamples); in main()
329 free(n2sc); in main()
/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/
H A Dnull2.c313 float *n2sc = malloc(sizeof(float) * (L+1)); in main() local
326 for (; pos <= tr->sqfrom[d]; pos++) n2sc[pos] += 1.0; in main()
327 for (; pos < tr->sqto[d]; pos++) n2sc[pos] += null2[dsq[pos]]; in main()
329 for (; pos <= L; pos++) n2sc[pos] += 1.0; in main()
334 n2sc[pos] = logf(n2sc[pos] / nsamples); in main()
338 free(n2sc); in main()