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Searched refs:nGammaCats (Results 1 – 3 of 3) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dlikelihood.c635 nGammaCats = m->numRateCats; in CondLikeDown_Gen_GibbsGamma()
702 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma()
727 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma()
750 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma()
773 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma()
958 nGammaCats; in CondLikeDown_NUC4_GibbsGamma() local
981 nGammaCats = m->numRateCats; in CondLikeDown_NUC4_GibbsGamma()
1038 if (r < nGammaCats) in CondLikeDown_NUC4_GibbsGamma()
6146 nGammaCats = m->numRateCats; in Likelihood_Gen_GibbsGamma()
6387 nGammaCats = m->numRateCats; in Likelihood_NUC4_GibbsGamma()
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H A Dmcmc.c10728 int c, i, k, nStates, hasPInvar, nGammaCats; in PrintAncStates_Gen() local
10778 nGammaCats = m->numRateCats; in PrintAncStates_Gen()
10781 freq = ((CLFlt)1.0 - pInvar) / nGammaCats; in PrintAncStates_Gen()
10801 if (rateCat[c] < nGammaCats) in PrintAncStates_Gen()
10838 for (k=0; k<nGammaCats; k++) in PrintAncStates_Gen()
10917 int c, i, k, *rateCat, hasPInvar, nGammaCats; in PrintAncStates_NUC4() local
10953 nGammaCats = m->numRateCats; in PrintAncStates_NUC4()
10957 freq = (CLFlt) 1.0 / nGammaCats; in PrintAncStates_NUC4()
10959 freq = ((CLFlt)1.0 - pInvar) / nGammaCats; in PrintAncStates_NUC4()
10978 if (rateCat[c] < nGammaCats) in PrintAncStates_NUC4()
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H A Dproposal.c13472 int i, c, isValidP, *rateCat, nGammaCats; in Move_Pinvar() local
13526 nGammaCats = m->numRateCats; in Move_Pinvar()
13534 if (rateCat[c] < nGammaCats) in Move_Pinvar()