Searched refs:nGammaCats (Results 1 – 3 of 3) sorted by relevance
/dports/biology/mrbayes/MrBayes-3.2.7/src/ |
H A D | likelihood.c | 635 nGammaCats = m->numRateCats; in CondLikeDown_Gen_GibbsGamma() 702 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma() 727 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma() 750 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma() 773 if (r < nGammaCats) in CondLikeDown_Gen_GibbsGamma() 958 nGammaCats; in CondLikeDown_NUC4_GibbsGamma() local 981 nGammaCats = m->numRateCats; in CondLikeDown_NUC4_GibbsGamma() 1038 if (r < nGammaCats) in CondLikeDown_NUC4_GibbsGamma() 6146 nGammaCats = m->numRateCats; in Likelihood_Gen_GibbsGamma() 6387 nGammaCats = m->numRateCats; in Likelihood_NUC4_GibbsGamma() [all …]
|
H A D | mcmc.c | 10728 int c, i, k, nStates, hasPInvar, nGammaCats; in PrintAncStates_Gen() local 10778 nGammaCats = m->numRateCats; in PrintAncStates_Gen() 10781 freq = ((CLFlt)1.0 - pInvar) / nGammaCats; in PrintAncStates_Gen() 10801 if (rateCat[c] < nGammaCats) in PrintAncStates_Gen() 10838 for (k=0; k<nGammaCats; k++) in PrintAncStates_Gen() 10917 int c, i, k, *rateCat, hasPInvar, nGammaCats; in PrintAncStates_NUC4() local 10953 nGammaCats = m->numRateCats; in PrintAncStates_NUC4() 10957 freq = (CLFlt) 1.0 / nGammaCats; in PrintAncStates_NUC4() 10959 freq = ((CLFlt)1.0 - pInvar) / nGammaCats; in PrintAncStates_NUC4() 10978 if (rateCat[c] < nGammaCats) in PrintAncStates_NUC4() [all …]
|
H A D | proposal.c | 13472 int i, c, isValidP, *rateCat, nGammaCats; in Move_Pinvar() local 13526 nGammaCats = m->numRateCats; in Move_Pinvar() 13534 if (rateCat[c] < nGammaCats) in Move_Pinvar()
|