Searched refs:nSitesOfPat (Results 1 – 4 of 4) sorted by relevance
5857 (*lnL) += lnLike * nSitesOfPat[c]; in Likelihood_Gen()6081 (*lnL) += lnLike * nSitesOfPat[c]; in Likelihood_Gen_SSE()7185 CLFlt *lnScaler, *nSitesOfPat, *lnL_Vec; in Likelihood_NY98_SSE() local7749 length += nSitesOfPat[c]; in Likelihood_Pars()7752 length += nSitesOfPat[c]; in Likelihood_Pars()7768 length += nSitesOfPat[c]; in Likelihood_Pars()7786 nParsChars += nSitesOfPat[c]; in Likelihood_Pars()7852 CLFlt *nSitesOfPat; in Likelihood_ParsStd() local7893 treeLength[c] += nSitesOfPat[c]; in Likelihood_ParsStd()7896 treeLength[c] += nSitesOfPat[c]; in Likelihood_ParsStd()[all …]
6759 if (!nSitesOfPat)6968 free (nSitesOfPat);9717 if (!nSitesOfPat) in Move_ParsFossilSPRClock()9873 free (nSitesOfPat); in Move_ParsFossilSPRClock()10030 free (nSitesOfPat); in Move_ParsFossilSPRClock()10077 free (nSitesOfPat); in Move_ParsFossilSPRClock()10227 if (!nSitesOfPat) in Move_ParsSPR()10537 free (nSitesOfPat); in Move_ParsSPR()12093 if (!nSitesOfPat) in Move_ParsSPRClock()12419 free (nSitesOfPat); in Move_ParsSPRClock()[all …]
1125 CLFlt *clInvar=NULL, *nSitesOfPat; in TreeLikelihood_Beagle() local1220 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in TreeLikelihood_Beagle()1324 (*lnL) += m->logLikelihoods[c] * nSitesOfPat[c]; in TreeLikelihood_Beagle()1349 (*lnL) += m->logLikelihoods[c] * nSitesOfPat[c]; in TreeLikelihood_Beagle()1351 (*lnL) += lnLikeI * nSitesOfPat[c]; in TreeLikelihood_Beagle()1354 (*lnL) += (m->logLikelihoods[c] + log(1.0 + exp(diff))) * nSitesOfPat[c]; in TreeLikelihood_Beagle()2621 CLFlt *clInvar=NULL, *nSitesOfPat; in TreeLikelihood_BeagleMultiPartition() local2902 nSitesOfPat = numSitesOfPat + (whichSitePats*numCompressedChars) + m->compCharStart; in TreeLikelihood_BeagleMultiPartition()2924 (*lnLDiv) += modelSettings[0].logLikelihoodsAll[site] * nSitesOfPat[c]; in TreeLikelihood_BeagleMultiPartition()2972 (*lnLDiv) += modelSettings[0].logLikelihoodsAll[site] * nSitesOfPat[c]; in TreeLikelihood_BeagleMultiPartition()[all …]
4863 CLFlt *nSitesOfPat; in GetFitchPartials() local4885 length += nSitesOfPat[c]; in GetFitchPartials()4900 length += nSitesOfPat[c]; in GetFitchPartials()5025 CLFlt *nSitesOfPat; in GetParsimonyBrlens() local5084 CLFlt *nSitesOfPat; in GetParsimonyLength() local5779 double *nSitesOfPat; in InitChainCondLikes() local6324 free (nSitesOfPat); in InitChainCondLikes()6325 nSitesOfPat = NULL; in InitChainCondLikes()6524 free (nSitesOfPat); in InitChainCondLikes()6526 nSitesOfPat = NULL; in InitChainCondLikes()[all …]