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Searched refs:nTips (Results 1 – 2 of 2) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dutils.c2547 int i, j, nTips; in BuildRandomRTopology() local
2562 p = &t->nodes[nTips]; in BuildRandomRTopology()
2566 q = &t->nodes[2*nTips-1]; in BuildRandomRTopology()
2570 for (i=2; i<nTips; i++) in BuildRandomRTopology()
2573 r = &t->nodes[i-2+nTips+1]; in BuildRandomRTopology()
2580 p = &t->nodes[j-i + nTips]; in BuildRandomRTopology()
2594 t->root = &t->nodes[2*nTips-1]; in BuildRandomRTopology()
2617 int i, j, nTips; in BuildRandomUTopology() local
2620 nTips = t->nNodes - t->nIntNodes; in BuildRandomUTopology()
2632 p = &t->nodes[nTips]; in BuildRandomUTopology()
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H A Dmcmc.c1453 int i, j, nTips; in BuildStepwiseTree() local
1467 nTips = j; in BuildStepwiseTree()
1470 for (i=0; i<nTips-1; i++) { in BuildStepwiseTree()
1471 j = (int) (RandomNumber(seed)*(nTips-1-i)); in BuildStepwiseTree()
1487 q = t->allDownPass[nTips-1]; in BuildStepwiseTree()
1495 for (i=2; i<nTips-1; i++) { in BuildStepwiseTree()
9475 int i, j, k, *nLineages=NULL, nDatedTips, nLineagesIn, nLineagesOut, nTips; in LnUniformPriorPr() local
9486 nTips = t->nNodes - t->nIntNodes - 1; in LnUniformPriorPr()
9507 …lnProb += (nTips - 1.0)*log(2.0) - LnFactorial(nTips) - log(nTips-1.0) - (nTips - 2.0)*log(treeAge… in LnUniformPriorPr()