Searched refs:n_cal (Results 1 – 10 of 10) sorted by relevance
363 for(i=0;i<tree->times->n_cal;++i) in DATE_Assign_Primary_Calibration()377 tree->a_nodes[i]->n_cal = 0; in DATE_Assign_Primary_Calibration()380 for(i=0;i<tree->times->n_cal;++i) in DATE_Assign_Primary_Calibration()396 tree->a_nodes[node_num]->n_cal++; in DATE_Assign_Primary_Calibration()670 if(tree->a_nodes[i]->n_cal > 1) in DATE_Check_Calibration_Constraints()842 for(i=0;i<tree->times->n_cal;++i) in DATE_MCMC()852 for(i=0;i<tree->times->n_cal;++i) in DATE_MCMC()1029 for(i=0;i<tree->times->n_cal;i++) in DATE_MCMC()1039 for(i=0;i<tree->times->n_cal;++i) in DATE_MCMC()1283 for(i=0;i<tree->times->n_cal;i++) in DATE_List_Of_Regraft_Nodes()[all …]
1713 n_cal = 0; in TIMES_Randomize_Tree_With_Time_Constraints()1719 if(n_cal > 0) cal_times = (phydbl *)mRealloc(cal_times,n_cal+1,sizeof(phydbl)); in TIMES_Randomize_Tree_With_Time_Constraints()1720 cal_times[n_cal] = Uni()*(cal->upper - cal->lower) + cal->lower; in TIMES_Randomize_Tree_With_Time_Constraints()1721 if(cal_times[n_cal] < time_oldest_cal) time_oldest_cal = cal_times[n_cal]; in TIMES_Randomize_Tree_With_Time_Constraints()1722 n_cal++; in TIMES_Randomize_Tree_With_Time_Constraints()1727 cal_ordering = (int *)mCalloc(n_cal,sizeof(int)); in TIMES_Randomize_Tree_With_Time_Constraints()1728 for(i=0;i<n_cal;++i) cal_ordering[i] = i; in TIMES_Randomize_Tree_With_Time_Constraints()1734 for(i=0;i<n_cal-1;i++) in TIMES_Randomize_Tree_With_Time_Constraints()1747 for(i=0;i<n_cal-1;i++) assert(!(cal_times[cal_ordering[i]] < cal_times[cal_ordering[i+1]])); in TIMES_Randomize_Tree_With_Time_Constraints()1751 for(i=0;i<n_cal;++i) in TIMES_Randomize_Tree_With_Time_Constraints()[all …]
2354 tree->times->a_cal[tree->times->n_cal] = cal; in XML_Read_Calibration()2355 tree->times->n_cal++; in XML_Read_Calibration()2357 if(tree->times->n_cal > 10 * tree->n_otu) in XML_Read_Calibration()2463 for(i=0;i<tree->times->n_cal;++i) in XML_Read_Calibration()2485 for(i=0;i<tree->times->n_cal;++i) in XML_Read_Calibration()
555 int n_cal; /*! Number of calibration constraints */ member1647 int n_cal; /* number of elements in a_cal */ member
1269 for(int i=0;i<times->n_cal;i++) Free_Calib(times->a_cal[i]); in TIMES_Free_Times()
633 to->times->n_cal = from->times->n_cal; in RATES_Duplicate_Calib_Struct()634 for(i=0;i<from->times->n_cal;i++) in RATES_Duplicate_Calib_Struct()
523 for(i=0;i<mixt_tree->times->n_cal-1;i++) in MIXT_Chain_Cal()
239 n->n_cal = 0; in Init_Node_Light()
4344 for(int i=0;i<tree->extra_tree->times->n_cal;++i) in MCMC_Death_Rate()4711 target_cal_idx = Rand_Int(0,tree->times->n_cal-1); in MCMC_Clade_Change()
156 char n_cal[6]; // Number of calibration records (I6) member