/dports/biology/bamutil/bamUtil-1.0.15/libStatGen/bam/ |
H A D | BamIndex.cpp | 134 if(ifread(indexFile, &(binPtr->n_chunk), 4) != 4) in readIndex() 144 uint32_t sizeOfChunkList = binPtr->n_chunk * sizeof(Chunk); in readIndex() 157 for(int i = 0; i < binPtr->n_chunk; i++) in readIndex() 177 ref->n_mapped = binPtr->chunks[binPtr->n_chunk - 1].chunk_beg; in readIndex() 178 ref->n_unmapped = binPtr->chunks[binPtr->n_chunk - 1].chunk_end; in readIndex() 303 for(int chunkIndex = 0; chunkIndex < bin->n_chunk; chunkIndex++) in getChunksForRegion() 453 std::cout << "\t\t\t# Chunks: " << binPtr->n_chunk << std::endl; in printIndex() 456 for(int chunkIndex = 0; chunkIndex < binPtr->n_chunk; in printIndex() 463 (chunkIndex != (binPtr->n_chunk - 1))) in printIndex()
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/dports/math/gemmlowp/gemmlowp-dc69acd/meta/ |
H A D | multi_thread_gemm.h | 89 const int n_chunk = params.n / real_tasks; in PrepareGemmTasks() local 93 i * n_chunk, n_chunk, task_params); in PrepareGemmTasks() 95 int sum_n = (real_tasks - 1) * n_chunk; in PrepareGemmTasks()
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H A D | legacy_multi_thread_common.h | 106 const std::int32_t n_chunk = n / real_tasks; in PrepareTasks() local 108 tasks->push_back(TaskRect(0, m, i * n_chunk, n_chunk)); in PrepareTasks() 110 const std::int32_t last_n_offset = (real_tasks - 1) * n_chunk; in PrepareTasks()
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/dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/ |
H A D | IndexBase.h | 109 n_chunk = 0; in reset() 113 int32_t n_chunk; // The number of chunks. variable
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H A D | Tabix.cpp | 174 if(ifread(indexFile, &(binPtr->n_chunk), 4) != 4) in readIndex() 183 uint32_t sizeOfChunkList = binPtr->n_chunk * sizeof(Chunk); in readIndex()
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/dports/cad/meshlab/meshlab-Meshlab-2020.05/src/plugins_experimental/edit_ocme/src/ooc_vector/ |
H A D | ooc_chains.h | 765 unsigned int n_chunk = (int) chunks.size(); in Serialize() local 766 memcpy(ptr,&n_chunk,sizeof (int) ); ptr+=sizeof(int); // number of chunk of the chain in Serialize() 767 for(unsigned int ci = 0; ci < n_chunk; ++ ci) in Serialize() 782 int n_chunk; in DeSerialize() local 783 memcpy(&n_chunk,ptr,sizeof (int) ); ptr+=sizeof(int); // number of chunk of the chain in DeSerialize() 784 if(n_chunk == 0) return ptr; in DeSerialize() 786 chunks.reserve(n_chunk); in DeSerialize() 787 for(int ic = 0; ic < n_chunk; ++ic){ in DeSerialize()
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-bam/ |
H A D | bam.cpp | 96 int32_t const n_chunk = LE2Host< int32_t>(data + 4); in LoadIndexBins() local 99 if (data + n_chunk * 16 > endp) in LoadIndexBins() 102 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndexBins() 112 this_bin.resize(n_chunk); in LoadIndexBins() 114 for (unsigned k = 0; k < n_chunk; ++k) { in LoadIndexBins() 123 data += 16 * n_chunk; in LoadIndexBins()
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-bam/ |
H A D | bam.cpp | 96 int32_t const n_chunk = LE2Host< int32_t>(data + 4); in LoadIndexBins() local 99 if (data + n_chunk * 16 > endp) in LoadIndexBins() 102 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndexBins() 112 this_bin.resize(n_chunk); in LoadIndexBins() 114 for (unsigned k = 0; k < n_chunk; ++k) { in LoadIndexBins() 123 data += 16 * n_chunk; in LoadIndexBins()
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-bam/ |
H A D | bam.cpp | 96 int32_t const n_chunk = LE2Host< int32_t>(data + 4); in LoadIndexBins() local 99 if (data + n_chunk * 16 > endp) in LoadIndexBins() 102 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndexBins() 112 this_bin.resize(n_chunk); in LoadIndexBins() 114 for (unsigned k = 0; k < n_chunk; ++k) { in LoadIndexBins() 123 data += 16 * n_chunk; in LoadIndexBins()
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/dports/math/py-numpy/numpy-1.20.3/benchmarks/benchmarks/ |
H A D | bench_shape_base.py | 79 [np.full(shape=[s//n_chunk for s, n_chunk in zip(shape, n_chunks)],
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
H A D | BAM_ReadCollection.c | 1119 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_Bins() local 1121 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndex_Bins() 1135 self->bins[bin].count = n_chunk; in LoadIndex_Bins() 1137 for (ii = 0; ii < n_chunk; ++ii) { in LoadIndex_Bins() 1144 j += n_chunk; in LoadIndex_Bins() 1146 offset += 8 + 16 * n_chunk; in LoadIndex_Bins() 1182 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_3() local 1184 if (n_chunk < 0) in LoadIndex_3() 1187 chunks += n_chunk; in LoadIndex_3() 1188 offset += 8 + 16 * n_chunk; in LoadIndex_3()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
H A D | BAM_ReadCollection.c | 1119 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_Bins() local 1121 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndex_Bins() 1135 self->bins[bin].count = n_chunk; in LoadIndex_Bins() 1137 for (ii = 0; ii < n_chunk; ++ii) { in LoadIndex_Bins() 1144 j += n_chunk; in LoadIndex_Bins() 1146 offset += 8 + 16 * n_chunk; in LoadIndex_Bins() 1182 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_3() local 1184 if (n_chunk < 0) in LoadIndex_3() 1187 chunks += n_chunk; in LoadIndex_3() 1188 offset += 8 + 16 * n_chunk; in LoadIndex_3()
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/dports/security/vault/vault-1.8.2/vendor/github.com/apache/arrow/r/src/ |
H A D | array_to_vector.cpp | 69 auto n_chunk = array->length(); in IngestSerial() local 70 RETURN_NOT_OK(IngestOne(data, array, k, n_chunk)); in IngestSerial() 71 k += n_chunk; in IngestSerial() 84 auto n_chunk = array->length(); in IngestParallel() local 85 tg->Append([=] { return IngestOne(data, array, k, n_chunk); }); in IngestParallel() 86 k += n_chunk; in IngestParallel()
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/dports/misc/apparix/apparix-11-062/util/ |
H A D | io.c | 1105 ; dim n_chunk = amount / bsz in mcxIOdiscard() local 1106 ; dim rem = amount - bsz * n_chunk in mcxIOdiscard() 1112 ; for (i=0;i<n_chunk;i++) in mcxIOdiscard() 1120 if (i < n_chunk) in mcxIOdiscard()
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/dports/www/grafana8/grafana-8.3.6/vendor/github.com/apache/arrow/r/src/ |
H A D | array_to_vector.cpp | 78 auto n_chunk = array->length(); in IngestSerial() local 79 RETURN_NOT_OK(IngestOne(data, array, k, n_chunk, i)); in IngestSerial() 80 k += n_chunk; in IngestSerial() 94 auto n_chunk = array->length(); in IngestParallel() local 95 tg->Append([=] { return IngestOne(data, array, k, n_chunk, i); }); in IngestParallel() 96 k += n_chunk; in IngestParallel()
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/dports/databases/arrow/apache-arrow-6.0.1/r/src/ |
H A D | array_to_vector.cpp | 82 auto n_chunk = array->length(); in ScheduleConvertTasks() local 85 if (array->null_count() == n_chunk) { in ScheduleConvertTasks() 86 return self->Ingest_all_nulls(out, k, n_chunk); in ScheduleConvertTasks() 88 return self->Ingest_some_nulls(out, array, k, n_chunk, i); in ScheduleConvertTasks() 92 k += n_chunk; in ScheduleConvertTasks()
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/dports/devel/valgrind-lts/valgrind-dragonfly-dragonfly/coregrind/m_aspacemgr/ |
H A D | aspacemgr-linux.c | 3343 Int n_chunk; in read_procselfmaps_into_buf() local 3353 n_chunk = ML_(am_read)( sr_Res(fd), &procmap_buf[buf_n_tot], in read_procselfmaps_into_buf() 3355 if (n_chunk >= 0) in read_procselfmaps_into_buf() 3356 buf_n_tot += n_chunk; in read_procselfmaps_into_buf() 3357 } while ( n_chunk > 0 && buf_n_tot < M_PROCMAP_BUF ); in read_procselfmaps_into_buf()
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/dports/devel/valgrind/valgrind-dragonfly-dragonfly/coregrind/m_aspacemgr/ |
H A D | aspacemgr-linux.c | 3343 Int n_chunk; in read_procselfmaps_into_buf() local 3353 n_chunk = ML_(am_read)( sr_Res(fd), &procmap_buf[buf_n_tot], in read_procselfmaps_into_buf() 3355 if (n_chunk >= 0) in read_procselfmaps_into_buf() 3356 buf_n_tot += n_chunk; in read_procselfmaps_into_buf() 3357 } while ( n_chunk > 0 && buf_n_tot < M_PROCMAP_BUF ); in read_procselfmaps_into_buf()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/ |
H A D | bamindex.cpp | 220 int32_t n_chunk = s_ReadInt32(in); in Read() local 221 m_Chunks.resize(n_chunk); in Read() 222 for ( int32_t i_chunk = 0; i_chunk < n_chunk; ++i_chunk ) { in Read()
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/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/libxml/src/ |
H A D | testapi.c | 1533 int n_chunk; in test_htmlCreatePushParserCtxt() local 1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt() 1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt() 2276 int n_chunk; in test_htmlParseChunk() local 2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk() 12782 int n_chunk; in test_xmlCreatePushParserCtxt() local 12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt() 13057 int n_chunk; in test_xmlCtxtResetPush() local 13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush() 13775 int n_chunk; in test_xmlParseChunk() local [all …]
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/libxml/src/ |
H A D | testapi.c | 1533 int n_chunk; in test_htmlCreatePushParserCtxt() local 1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt() 1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt() 2276 int n_chunk; in test_htmlParseChunk() local 2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk() 12782 int n_chunk; in test_xmlCreatePushParserCtxt() local 12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt() 13057 int n_chunk; in test_xmlCtxtResetPush() local 13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush() 13775 int n_chunk; in test_xmlParseChunk() local [all …]
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/dports/graphics/opencollada/OpenCOLLADA-1.6.68/Externals/LibXML/ |
H A D | testapi.c | 1506 int n_chunk; in test_htmlCreatePushParserCtxt() local 1516 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt() 1544 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt() 2243 int n_chunk; in test_htmlParseChunk() local 2250 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk() 12632 int n_chunk; in test_xmlCreatePushParserCtxt() local 12640 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt() 12901 int n_chunk; in test_xmlCtxtResetPush() local 12910 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush() 13627 int n_chunk; in test_xmlParseChunk() local [all …]
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/dports/textproc/libxml2/libxml2-2.9.12/ |
H A D | testapi.c | 1533 int n_chunk; in test_htmlCreatePushParserCtxt() local 1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt() 1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt() 2276 int n_chunk; in test_htmlParseChunk() local 2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk() 12782 int n_chunk; in test_xmlCreatePushParserCtxt() local 12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt() 13057 int n_chunk; in test_xmlCtxtResetPush() local 13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush() 13775 int n_chunk; in test_xmlParseChunk() local [all …]
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/dports/textproc/py-libxml2/libxml2-2.9.12/ |
H A D | testapi.c | 1533 int n_chunk; in test_htmlCreatePushParserCtxt() local 1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt() 1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt() 2276 int n_chunk; in test_htmlParseChunk() local 2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk() 12782 int n_chunk; in test_xmlCreatePushParserCtxt() local 12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt() 13057 int n_chunk; in test_xmlCtxtResetPush() local 13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush() 13775 int n_chunk; in test_xmlParseChunk() local [all …]
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_dependencies/libxml2/ |
H A D | testapi.c | 1533 int n_chunk; in test_htmlCreatePushParserCtxt() local 1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt() 1571 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt() 2270 int n_chunk; in test_htmlParseChunk() local 2277 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk() 12662 int n_chunk; in test_xmlCreatePushParserCtxt() local 12670 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt() 12931 int n_chunk; in test_xmlCtxtResetPush() local 12940 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush() 13646 int n_chunk; in test_xmlParseChunk() local [all …]
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