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Searched refs:n_chunk (Results 1 – 25 of 25) sorted by relevance

/dports/biology/bamutil/bamUtil-1.0.15/libStatGen/bam/
H A DBamIndex.cpp134 if(ifread(indexFile, &(binPtr->n_chunk), 4) != 4) in readIndex()
144 uint32_t sizeOfChunkList = binPtr->n_chunk * sizeof(Chunk); in readIndex()
157 for(int i = 0; i < binPtr->n_chunk; i++) in readIndex()
177 ref->n_mapped = binPtr->chunks[binPtr->n_chunk - 1].chunk_beg; in readIndex()
178 ref->n_unmapped = binPtr->chunks[binPtr->n_chunk - 1].chunk_end; in readIndex()
303 for(int chunkIndex = 0; chunkIndex < bin->n_chunk; chunkIndex++) in getChunksForRegion()
453 std::cout << "\t\t\t# Chunks: " << binPtr->n_chunk << std::endl; in printIndex()
456 for(int chunkIndex = 0; chunkIndex < binPtr->n_chunk; in printIndex()
463 (chunkIndex != (binPtr->n_chunk - 1))) in printIndex()
/dports/math/gemmlowp/gemmlowp-dc69acd/meta/
H A Dmulti_thread_gemm.h89 const int n_chunk = params.n / real_tasks; in PrepareGemmTasks() local
93 i * n_chunk, n_chunk, task_params); in PrepareGemmTasks()
95 int sum_n = (real_tasks - 1) * n_chunk; in PrepareGemmTasks()
H A Dlegacy_multi_thread_common.h106 const std::int32_t n_chunk = n / real_tasks; in PrepareTasks() local
108 tasks->push_back(TaskRect(0, m, i * n_chunk, n_chunk)); in PrepareTasks()
110 const std::int32_t last_n_offset = (real_tasks - 1) * n_chunk; in PrepareTasks()
/dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/
H A DIndexBase.h109 n_chunk = 0; in reset()
113 int32_t n_chunk; // The number of chunks. variable
H A DTabix.cpp174 if(ifread(indexFile, &(binPtr->n_chunk), 4) != 4) in readIndex()
183 uint32_t sizeOfChunkList = binPtr->n_chunk * sizeof(Chunk); in readIndex()
/dports/cad/meshlab/meshlab-Meshlab-2020.05/src/plugins_experimental/edit_ocme/src/ooc_vector/
H A Dooc_chains.h765 unsigned int n_chunk = (int) chunks.size(); in Serialize() local
766 memcpy(ptr,&n_chunk,sizeof (int) ); ptr+=sizeof(int); // number of chunk of the chain in Serialize()
767 for(unsigned int ci = 0; ci < n_chunk; ++ ci) in Serialize()
782 int n_chunk; in DeSerialize() local
783 memcpy(&n_chunk,ptr,sizeof (int) ); ptr+=sizeof(int); // number of chunk of the chain in DeSerialize()
784 if(n_chunk == 0) return ptr; in DeSerialize()
786 chunks.reserve(n_chunk); in DeSerialize()
787 for(int ic = 0; ic < n_chunk; ++ic){ in DeSerialize()
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-bam/
H A Dbam.cpp96 int32_t const n_chunk = LE2Host< int32_t>(data + 4); in LoadIndexBins() local
99 if (data + n_chunk * 16 > endp) in LoadIndexBins()
102 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndexBins()
112 this_bin.resize(n_chunk); in LoadIndexBins()
114 for (unsigned k = 0; k < n_chunk; ++k) { in LoadIndexBins()
123 data += 16 * n_chunk; in LoadIndexBins()
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-bam/
H A Dbam.cpp96 int32_t const n_chunk = LE2Host< int32_t>(data + 4); in LoadIndexBins() local
99 if (data + n_chunk * 16 > endp) in LoadIndexBins()
102 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndexBins()
112 this_bin.resize(n_chunk); in LoadIndexBins()
114 for (unsigned k = 0; k < n_chunk; ++k) { in LoadIndexBins()
123 data += 16 * n_chunk; in LoadIndexBins()
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-bam/
H A Dbam.cpp96 int32_t const n_chunk = LE2Host< int32_t>(data + 4); in LoadIndexBins() local
99 if (data + n_chunk * 16 > endp) in LoadIndexBins()
102 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndexBins()
112 this_bin.resize(n_chunk); in LoadIndexBins()
114 for (unsigned k = 0; k < n_chunk; ++k) { in LoadIndexBins()
123 data += 16 * n_chunk; in LoadIndexBins()
/dports/math/py-numpy/numpy-1.20.3/benchmarks/benchmarks/
H A Dbench_shape_base.py79 [np.full(shape=[s//n_chunk for s, n_chunk in zip(shape, n_chunks)],
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DBAM_ReadCollection.c1119 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_Bins() local
1121 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndex_Bins()
1135 self->bins[bin].count = n_chunk; in LoadIndex_Bins()
1137 for (ii = 0; ii < n_chunk; ++ii) { in LoadIndex_Bins()
1144 j += n_chunk; in LoadIndex_Bins()
1146 offset += 8 + 16 * n_chunk; in LoadIndex_Bins()
1182 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_3() local
1184 if (n_chunk < 0) in LoadIndex_3()
1187 chunks += n_chunk; in LoadIndex_3()
1188 offset += 8 + 16 * n_chunk; in LoadIndex_3()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DBAM_ReadCollection.c1119 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_Bins() local
1121 if (bin == MAX_BIN && n_chunk == 2) { in LoadIndex_Bins()
1135 self->bins[bin].count = n_chunk; in LoadIndex_Bins()
1137 for (ii = 0; ii < n_chunk; ++ii) { in LoadIndex_Bins()
1144 j += n_chunk; in LoadIndex_Bins()
1146 offset += 8 + 16 * n_chunk; in LoadIndex_Bins()
1182 int32_t const n_chunk = LE2Int32(data + offset + 4); in LoadIndex_3() local
1184 if (n_chunk < 0) in LoadIndex_3()
1187 chunks += n_chunk; in LoadIndex_3()
1188 offset += 8 + 16 * n_chunk; in LoadIndex_3()
/dports/security/vault/vault-1.8.2/vendor/github.com/apache/arrow/r/src/
H A Darray_to_vector.cpp69 auto n_chunk = array->length(); in IngestSerial() local
70 RETURN_NOT_OK(IngestOne(data, array, k, n_chunk)); in IngestSerial()
71 k += n_chunk; in IngestSerial()
84 auto n_chunk = array->length(); in IngestParallel() local
85 tg->Append([=] { return IngestOne(data, array, k, n_chunk); }); in IngestParallel()
86 k += n_chunk; in IngestParallel()
/dports/misc/apparix/apparix-11-062/util/
H A Dio.c1105 ; dim n_chunk = amount / bsz in mcxIOdiscard() local
1106 ; dim rem = amount - bsz * n_chunk in mcxIOdiscard()
1112 ; for (i=0;i<n_chunk;i++) in mcxIOdiscard()
1120 if (i < n_chunk) in mcxIOdiscard()
/dports/www/grafana8/grafana-8.3.6/vendor/github.com/apache/arrow/r/src/
H A Darray_to_vector.cpp78 auto n_chunk = array->length(); in IngestSerial() local
79 RETURN_NOT_OK(IngestOne(data, array, k, n_chunk, i)); in IngestSerial()
80 k += n_chunk; in IngestSerial()
94 auto n_chunk = array->length(); in IngestParallel() local
95 tg->Append([=] { return IngestOne(data, array, k, n_chunk, i); }); in IngestParallel()
96 k += n_chunk; in IngestParallel()
/dports/databases/arrow/apache-arrow-6.0.1/r/src/
H A Darray_to_vector.cpp82 auto n_chunk = array->length(); in ScheduleConvertTasks() local
85 if (array->null_count() == n_chunk) { in ScheduleConvertTasks()
86 return self->Ingest_all_nulls(out, k, n_chunk); in ScheduleConvertTasks()
88 return self->Ingest_some_nulls(out, array, k, n_chunk, i); in ScheduleConvertTasks()
92 k += n_chunk; in ScheduleConvertTasks()
/dports/devel/valgrind-lts/valgrind-dragonfly-dragonfly/coregrind/m_aspacemgr/
H A Daspacemgr-linux.c3343 Int n_chunk; in read_procselfmaps_into_buf() local
3353 n_chunk = ML_(am_read)( sr_Res(fd), &procmap_buf[buf_n_tot], in read_procselfmaps_into_buf()
3355 if (n_chunk >= 0) in read_procselfmaps_into_buf()
3356 buf_n_tot += n_chunk; in read_procselfmaps_into_buf()
3357 } while ( n_chunk > 0 && buf_n_tot < M_PROCMAP_BUF ); in read_procselfmaps_into_buf()
/dports/devel/valgrind/valgrind-dragonfly-dragonfly/coregrind/m_aspacemgr/
H A Daspacemgr-linux.c3343 Int n_chunk; in read_procselfmaps_into_buf() local
3353 n_chunk = ML_(am_read)( sr_Res(fd), &procmap_buf[buf_n_tot], in read_procselfmaps_into_buf()
3355 if (n_chunk >= 0) in read_procselfmaps_into_buf()
3356 buf_n_tot += n_chunk; in read_procselfmaps_into_buf()
3357 } while ( n_chunk > 0 && buf_n_tot < M_PROCMAP_BUF ); in read_procselfmaps_into_buf()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/
H A Dbamindex.cpp220 int32_t n_chunk = s_ReadInt32(in); in Read() local
221 m_Chunks.resize(n_chunk); in Read()
222 for ( int32_t i_chunk = 0; i_chunk < n_chunk; ++i_chunk ) { in Read()
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/libxml/src/
H A Dtestapi.c1533 int n_chunk; in test_htmlCreatePushParserCtxt() local
1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt()
1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt()
2276 int n_chunk; in test_htmlParseChunk() local
2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk()
12782 int n_chunk; in test_xmlCreatePushParserCtxt() local
12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt()
13057 int n_chunk; in test_xmlCtxtResetPush() local
13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush()
13775 int n_chunk; in test_xmlParseChunk() local
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/dports/www/qt5-webengine/qtwebengine-everywhere-src-5.15.2/src/3rdparty/chromium/third_party/libxml/src/
H A Dtestapi.c1533 int n_chunk; in test_htmlCreatePushParserCtxt() local
1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt()
1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt()
2276 int n_chunk; in test_htmlParseChunk() local
2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk()
12782 int n_chunk; in test_xmlCreatePushParserCtxt() local
12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt()
13057 int n_chunk; in test_xmlCtxtResetPush() local
13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush()
13775 int n_chunk; in test_xmlParseChunk() local
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/dports/graphics/opencollada/OpenCOLLADA-1.6.68/Externals/LibXML/
H A Dtestapi.c1506 int n_chunk; in test_htmlCreatePushParserCtxt() local
1516 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt()
1544 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt()
2243 int n_chunk; in test_htmlParseChunk() local
2250 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk()
12632 int n_chunk; in test_xmlCreatePushParserCtxt() local
12640 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt()
12901 int n_chunk; in test_xmlCtxtResetPush() local
12910 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush()
13627 int n_chunk; in test_xmlParseChunk() local
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/dports/textproc/libxml2/libxml2-2.9.12/
H A Dtestapi.c1533 int n_chunk; in test_htmlCreatePushParserCtxt() local
1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt()
1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt()
2276 int n_chunk; in test_htmlParseChunk() local
2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk()
12782 int n_chunk; in test_xmlCreatePushParserCtxt() local
12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt()
13057 int n_chunk; in test_xmlCtxtResetPush() local
13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush()
13775 int n_chunk; in test_xmlParseChunk() local
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/dports/textproc/py-libxml2/libxml2-2.9.12/
H A Dtestapi.c1533 int n_chunk; in test_htmlCreatePushParserCtxt() local
1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt()
1574 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt()
2276 int n_chunk; in test_htmlParseChunk() local
2283 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk()
12782 int n_chunk; in test_xmlCreatePushParserCtxt() local
12790 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt()
13057 int n_chunk; in test_xmlCtxtResetPush() local
13066 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush()
13775 int n_chunk; in test_xmlParseChunk() local
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/dports/biology/py-python-libsbml/python-libsbml-5.19.0/libsbml_dependencies/libxml2/
H A Dtestapi.c1533 int n_chunk; in test_htmlCreatePushParserCtxt() local
1543 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlCreatePushParserCtxt()
1571 printf(" %d", n_chunk); in test_htmlCreatePushParserCtxt()
2270 int n_chunk; in test_htmlParseChunk() local
2277 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_htmlParseChunk()
12662 int n_chunk; in test_xmlCreatePushParserCtxt() local
12670 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCreatePushParserCtxt()
12931 int n_chunk; in test_xmlCtxtResetPush() local
12940 for (n_chunk = 0;n_chunk < gen_nb_const_char_ptr;n_chunk++) { in test_xmlCtxtResetPush()
13646 int n_chunk; in test_xmlParseChunk() local
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