/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | p7_hmmd_search_stats.c | 176 network_64bit = esl_hton64(obj->n_past_vit); in p7_hmmd_search_stats_Serialize() 177 memcpy((void *) ptr, (void *) &network_64bit, sizeof(obj->n_past_vit)); in p7_hmmd_search_stats_Serialize() 178 ptr += sizeof(obj->n_past_vit); in p7_hmmd_search_stats_Serialize() 340 ret_obj->n_past_vit = esl_ntoh64(network_64bit); in p7_hmmd_search_stats_Deserialize() 461 if(first->n_past_vit != second->n_past_vit){ in hmmd_search_stats_Same() 545 serial[i].n_past_vit = rand(); in serialize_utest() 675 foo.n_past_vit = 5; in serialize_error_conditions_utest() 764 foo.n_past_vit = 5; in deserialize_error_conditions_utest()
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H A D | hmmpgmd.h | 27 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
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H A D | p7_pipeline.c | 241 pli->n_past_vit = 0; in p7_pipeline_Create() 619 p1->n_past_vit += p2->n_past_vit; in p7_pipeline_Merge() 726 pli->n_past_vit++; in p7_Pipeline() 1750 pli->n_past_vit, in p7_pli_Statistics() 1751 (double) pli->n_past_vit / ntargets, in p7_pli_Statistics()
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H A D | hmmdwrkr.c | 109 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings() 799 stats.n_past_vit = pli->n_past_vit; in send_results()
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H A D | hmmdwrkr_shard.c | 126 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings() 833 stats.n_past_vit = pli->n_past_vit; in send_results()
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H A D | hmmdmstr.c | 677 results->stats.n_past_vit = 0; in init_results() 717 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results() 821 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
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H A D | hmmc2.c | 488 pli->n_past_vit = stats->n_past_vit; in main()
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H A D | hmmpgmd2msa.c | 609 stats.n_past_vit = pli->n_past_vit; in hmmpgmd2msa_utest()
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H A D | hmmdmstr_shard.c | 715 results->stats.n_past_vit = 0; in init_results() 755 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results() 860 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
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H A D | mpisupport.c | 719 bogus.n_past_vit = 0; in p7_pipeline_MPISend() 735 …if (MPI_Pack(&pli->n_past_vit, 1, MPI_UINT64_T, *buf, n, &pos, comm) != 0) ESL_XEXCEPTION(eslESYS… in p7_pipeline_MPISend() 805 …if (MPI_Unpack(*buf, n, &pos, &(pli->n_past_vit), 1, MPI_UINT64_T, comm) != 0) ESL_XEXCEPTION(esl… in p7_pipeline_MPIRecv()
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H A D | hmmer.h | 1231 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
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/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | p7_hmmd_search_stats.c | 176 network_64bit = esl_hton64(obj->n_past_vit); in p7_hmmd_search_stats_Serialize() 177 memcpy((void *) ptr, (void *) &network_64bit, sizeof(obj->n_past_vit)); in p7_hmmd_search_stats_Serialize() 178 ptr += sizeof(obj->n_past_vit); in p7_hmmd_search_stats_Serialize() 340 ret_obj->n_past_vit = esl_ntoh64(network_64bit); in p7_hmmd_search_stats_Deserialize() 461 if(first->n_past_vit != second->n_past_vit){ in hmmd_search_stats_Same() 545 serial[i].n_past_vit = rand(); in serialize_utest() 675 foo.n_past_vit = 5; in serialize_error_conditions_utest() 764 foo.n_past_vit = 5; in deserialize_error_conditions_utest()
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H A D | hmmpgmd.h | 27 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
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H A D | p7_pipeline.c | 241 pli->n_past_vit = 0; in p7_pipeline_Create() 619 p1->n_past_vit += p2->n_past_vit; in p7_pipeline_Merge() 726 pli->n_past_vit++; in p7_Pipeline() 1750 pli->n_past_vit, in p7_pli_Statistics() 1751 (double) pli->n_past_vit / ntargets, in p7_pli_Statistics()
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H A D | hmmdwrkr.c | 109 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings() 799 stats.n_past_vit = pli->n_past_vit; in send_results()
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H A D | hmmdwrkr_shard.c | 126 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings() 833 stats.n_past_vit = pli->n_past_vit; in send_results()
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H A D | hmmdmstr.c | 677 results->stats.n_past_vit = 0; in init_results() 717 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results() 821 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
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H A D | hmmc2.c | 488 pli->n_past_vit = stats->n_past_vit; in main()
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H A D | hmmpgmd2msa.c | 609 stats.n_past_vit = pli->n_past_vit; in hmmpgmd2msa_utest()
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H A D | hmmdmstr_shard.c | 715 results->stats.n_past_vit = 0; in init_results() 755 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results() 860 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
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H A D | mpisupport.c | 719 bogus.n_past_vit = 0; in p7_pipeline_MPISend() 735 …if (MPI_Pack(&pli->n_past_vit, 1, MPI_UINT64_T, *buf, n, &pos, comm) != 0) ESL_XEXCEPTION(eslESYS… in p7_pipeline_MPISend() 805 …if (MPI_Unpack(*buf, n, &pos, &(pli->n_past_vit), 1, MPI_UINT64_T, comm) != 0) ESL_XEXCEPTION(esl… in p7_pipeline_MPIRecv()
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H A D | hmmer.h | 1231 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
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/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | cm_pipeline.c | 1203 p1->acct[p].n_past_vit += p2->acct[p].n_past_vit; in cm_pipeline_Merge() 1904 pli_acct->n_past_vit, in pli_pass_statistics() 1907 nwin_fcyk = nwin_final = pli_acct->n_past_vit; in pli_pass_statistics() 2137 pli_acct->n_past_vit, in pli_hmmonly_pass_statistics() 2203 pli->acct[PLI_PASS_CM_SUMMED].n_past_vit += pli->acct[p].n_past_vit; in pli_sum_statistics() 2252 pli_acct->n_past_vit = 0; in cm_pli_ZeroAccounting() 2682 pli->acct[pli->cur_pass_idx].n_past_vit++; in pli_p7_filter()
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H A D | mpisupport.c | 1058 …if (MPI_Pack(&(pli->acct[pass_idx].n_past_vit), 1, MPI_LONG_LONG_INT, *buf, n, &pos, comm) !=… in cm_pipeline_MPISend() 1171 …if (MPI_Unpack(*buf, n, &pos, &(pli->acct[pass_idx].n_past_vit), 1, MPI_LONG_LONG_INT, comm) … in cm_pipeline_MPIRecv()
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H A D | infernal.h | 2121 uint64_t n_past_vit; /* # windows that pass ViterbiFilter() */ member
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