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Searched refs:n_past_vit (Results 1 – 25 of 25) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_hmmd_search_stats.c176 network_64bit = esl_hton64(obj->n_past_vit); in p7_hmmd_search_stats_Serialize()
177 memcpy((void *) ptr, (void *) &network_64bit, sizeof(obj->n_past_vit)); in p7_hmmd_search_stats_Serialize()
178 ptr += sizeof(obj->n_past_vit); in p7_hmmd_search_stats_Serialize()
340 ret_obj->n_past_vit = esl_ntoh64(network_64bit); in p7_hmmd_search_stats_Deserialize()
461 if(first->n_past_vit != second->n_past_vit){ in hmmd_search_stats_Same()
545 serial[i].n_past_vit = rand(); in serialize_utest()
675 foo.n_past_vit = 5; in serialize_error_conditions_utest()
764 foo.n_past_vit = 5; in deserialize_error_conditions_utest()
H A Dhmmpgmd.h27 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
H A Dp7_pipeline.c241 pli->n_past_vit = 0; in p7_pipeline_Create()
619 p1->n_past_vit += p2->n_past_vit; in p7_pipeline_Merge()
726 pli->n_past_vit++; in p7_Pipeline()
1750 pli->n_past_vit, in p7_pli_Statistics()
1751 (double) pli->n_past_vit / ntargets, in p7_pli_Statistics()
H A Dhmmdwrkr.c109 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings()
799 stats.n_past_vit = pli->n_past_vit; in send_results()
H A Dhmmdwrkr_shard.c126 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings()
833 stats.n_past_vit = pli->n_past_vit; in send_results()
H A Dhmmdmstr.c677 results->stats.n_past_vit = 0; in init_results()
717 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results()
821 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
H A Dhmmc2.c488 pli->n_past_vit = stats->n_past_vit; in main()
H A Dhmmpgmd2msa.c609 stats.n_past_vit = pli->n_past_vit; in hmmpgmd2msa_utest()
H A Dhmmdmstr_shard.c715 results->stats.n_past_vit = 0; in init_results()
755 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results()
860 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
H A Dmpisupport.c719 bogus.n_past_vit = 0; in p7_pipeline_MPISend()
735 …if (MPI_Pack(&pli->n_past_vit, 1, MPI_UINT64_T, *buf, n, &pos, comm) != 0) ESL_XEXCEPTION(eslESYS… in p7_pipeline_MPISend()
805 …if (MPI_Unpack(*buf, n, &pos, &(pli->n_past_vit), 1, MPI_UINT64_T, comm) != 0) ESL_XEXCEPTION(esl… in p7_pipeline_MPIRecv()
H A Dhmmer.h1231 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_hmmd_search_stats.c176 network_64bit = esl_hton64(obj->n_past_vit); in p7_hmmd_search_stats_Serialize()
177 memcpy((void *) ptr, (void *) &network_64bit, sizeof(obj->n_past_vit)); in p7_hmmd_search_stats_Serialize()
178 ptr += sizeof(obj->n_past_vit); in p7_hmmd_search_stats_Serialize()
340 ret_obj->n_past_vit = esl_ntoh64(network_64bit); in p7_hmmd_search_stats_Deserialize()
461 if(first->n_past_vit != second->n_past_vit){ in hmmd_search_stats_Same()
545 serial[i].n_past_vit = rand(); in serialize_utest()
675 foo.n_past_vit = 5; in serialize_error_conditions_utest()
764 foo.n_past_vit = 5; in deserialize_error_conditions_utest()
H A Dhmmpgmd.h27 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
H A Dp7_pipeline.c241 pli->n_past_vit = 0; in p7_pipeline_Create()
619 p1->n_past_vit += p2->n_past_vit; in p7_pipeline_Merge()
726 pli->n_past_vit++; in p7_Pipeline()
1750 pli->n_past_vit, in p7_pli_Statistics()
1751 (double) pli->n_past_vit / ntargets, in p7_pli_Statistics()
H A Dhmmdwrkr.c109 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings()
799 stats.n_past_vit = pli->n_past_vit; in send_results()
H A Dhmmdwrkr_shard.c126 …i, pli->nseqs, pli->nres, pli->n_past_msv, pli->n_past_bias, pli->n_past_vit, pli->n_past_fwd, buf… in print_timings()
833 stats.n_past_vit = pli->n_past_vit; in send_results()
H A Dhmmdmstr.c677 results->stats.n_past_vit = 0; in init_results()
717 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results()
821 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
H A Dhmmc2.c488 pli->n_past_vit = stats->n_past_vit; in main()
H A Dhmmpgmd2msa.c609 stats.n_past_vit = pli->n_past_vit; in hmmpgmd2msa_utest()
H A Dhmmdmstr_shard.c715 results->stats.n_past_vit = 0; in init_results()
755 results->stats.n_past_vit += worker->stats.n_past_vit; in gather_results()
860 pli->n_past_vit = results->stats.n_past_vit; in forward_results()
H A Dmpisupport.c719 bogus.n_past_vit = 0; in p7_pipeline_MPISend()
735 …if (MPI_Pack(&pli->n_past_vit, 1, MPI_UINT64_T, *buf, n, &pos, comm) != 0) ESL_XEXCEPTION(eslESYS… in p7_pipeline_MPISend()
805 …if (MPI_Unpack(*buf, n, &pos, &(pli->n_past_vit), 1, MPI_UINT64_T, comm) != 0) ESL_XEXCEPTION(esl… in p7_pipeline_MPIRecv()
H A Dhmmer.h1231 uint64_t n_past_vit; /* # comparisons that pass ViterbiFilter() */ member
/dports/biology/infernal/infernal-1.1.3/src/
H A Dcm_pipeline.c1203 p1->acct[p].n_past_vit += p2->acct[p].n_past_vit; in cm_pipeline_Merge()
1904 pli_acct->n_past_vit, in pli_pass_statistics()
1907 nwin_fcyk = nwin_final = pli_acct->n_past_vit; in pli_pass_statistics()
2137 pli_acct->n_past_vit, in pli_hmmonly_pass_statistics()
2203 pli->acct[PLI_PASS_CM_SUMMED].n_past_vit += pli->acct[p].n_past_vit; in pli_sum_statistics()
2252 pli_acct->n_past_vit = 0; in cm_pli_ZeroAccounting()
2682 pli->acct[pli->cur_pass_idx].n_past_vit++; in pli_p7_filter()
H A Dmpisupport.c1058 …if (MPI_Pack(&(pli->acct[pass_idx].n_past_vit), 1, MPI_LONG_LONG_INT, *buf, n, &pos, comm) !=… in cm_pipeline_MPISend()
1171 …if (MPI_Unpack(*buf, n, &pos, &(pli->acct[pass_idx].n_past_vit), 1, MPI_LONG_LONG_INT, comm) … in cm_pipeline_MPIRecv()
H A Dinfernal.h2121 uint64_t n_past_vit; /* # windows that pass ViterbiFilter() */ member