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/dports/biology/hhsuite/hh-suite-3.3.0/src/
H A Dhhblits.cpp987 int n_realignments = 0; in perform_realign() local
995 if (n_realignments >= par.realign_max in perform_realign()
996 && n_realignments >= imax(par.B, par.Z)) in perform_realign()
999 if (n_realignments >= imax(par.B, par.Z)) in perform_realign()
1001 if (n_realignments >= imax(par.b, par.z) && hit_cur.Probab < par.p) in perform_realign()
1003 if (n_realignments >= imax(par.b, par.z) && hit_cur.Eval > par.E) in perform_realign()
1016 n_realignments++; in perform_realign()