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Searched refs:ncbi_args (Results 1 – 25 of 33) sorted by relevance

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/dports/biology/py-ete3/ete3-3.1.2/ete3/tools/
H A Dete_ncbiquery.py51 ncbi_args = ncbi_args_p.add_argument_group('NCBI GENERAL OPTIONS')
53 …ncbi_args.add_argument("--search", dest="search", nargs="+", help="A list of taxid or species name…
55 ncbi_args.add_argument("--db", dest="dbfile",
59 ncbi_args.add_argument("--taxdump_file", dest="taxdumpfile",
63 ncbi_args.add_argument("--create", dest="create",
68 ncbi_args.add_argument("--fuzzy", dest="fuzzy", type=float,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/blast/
H A Dblastp_node.cpp50 CBlastpNode::CBlastpNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CBlastpNode() argument
53 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CBlastpNode()
H A Dblastx_node.cpp50 CBlastxNode::CBlastxNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CBlastxNode() argument
53 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CBlastxNode()
H A Drpsblast_node.cpp53 CRPSBlastNode::CRPSBlastNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CRPSBlastNode() argument
56 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(input) in CRPSBlastNode()
H A Drpstblastn_node.cpp52 CRPSTBlastnNode::CRPSTBlastnNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CRPSTBlastnNode() argument
55 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(input) in CRPSTBlastnNode()
H A Dblastp_node.hpp47 CBlastpNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Drpsblast_node.hpp47 CRPSBlastNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Drpstblastn_node.hpp47 CRPSTBlastnNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dtblastn_node.hpp47 CTblastnNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dblastn_node.hpp47 CBlastnNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dblastx_node.hpp47 CBlastxNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dblastn_node.cpp50 CBlastnNode::CBlastnNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CBlastnNode() argument
53 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CBlastnNode()
H A Dtblastn_node.cpp51 CTblastnNode::CTblastnNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CTblastnNode() argument
54 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CTblastnNode()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/blast/
H A Dblastp_node.cpp50 CBlastpNode::CBlastpNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CBlastpNode() argument
53 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CBlastpNode()
H A Dblastx_node.cpp50 CBlastxNode::CBlastxNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CBlastxNode() argument
53 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CBlastxNode()
H A Drpsblast_node.cpp53 CRPSBlastNode::CRPSBlastNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CRPSBlastNode() argument
56 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(input) in CRPSBlastNode()
H A Drpstblastn_node.cpp52 CRPSTBlastnNode::CRPSTBlastnNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CRPSTBlastnNode() argument
55 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(input) in CRPSTBlastnNode()
H A Dblastn_node.hpp47 CBlastnNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dblastp_node.hpp47 CBlastpNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dblastx_node.hpp47 CBlastxNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Drpsblast_node.hpp47 CRPSBlastNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Drpstblastn_node.hpp47 CRPSTBlastnNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dtblastn_node.hpp47 CTblastnNode (int check_num, const CNcbiArguments & ncbi_args, const CArgs& args,
H A Dblastn_node.cpp50 CBlastnNode::CBlastnNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CBlastnNode() argument
53 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CBlastnNode()
H A Dtblastn_node.cpp51 CTblastnNode::CTblastnNode (int node_num, const CNcbiArguments & ncbi_args, const CArgs& args, in CTblastnNode() argument
54 … CBlastNode(node_num, ncbi_args, args, bah, query_index, num_queries, mailbox), m_Input(kEmptyStr) in CTblastnNode()

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