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Searched refs:nconsecutive (Results 1 – 12 of 12) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Ddiag.c52 new->nconsecutive = queryend - querystart + 1;
98 return this->nconsecutive; in Diag_nconsecutive()
164 if (a->nconsecutive > b->nconsecutive) { in nconsecutive_cmp()
166 } else if (b->nconsecutive > a->nconsecutive) { in nconsecutive_cmp()
384 color,diag->nconsecutive,diag->score); in print_segments_for_R_list()
389 color,diag->nconsecutive,diag->score); in print_segments_for_R_list()
407 color,diag->nconsecutive,diag->score); in print_segments_for_R_array()
412 color,diag->nconsecutive,diag->score); in print_segments_for_R_array()
438 if (expected_nconsecutive < 100 && super->nconsecutive > expected_nconsecutive - 10) { in compute_dominance()
440 threshold = super->nconsecutive - DOMINANCE_END_EQUIV; in compute_dominance()
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H A Dsplice.c2456 nconsecutive = 0; in Splice_trim_novel_spliceends_5()
2459 nconsecutive++; in Splice_trim_novel_spliceends_5()
2495 nconsecutive = 0; in Splice_trim_novel_spliceends_5()
2498 nconsecutive++; in Splice_trim_novel_spliceends_5()
2537 nconsecutive = 0; in Splice_trim_novel_spliceends_5()
2540 nconsecutive++; in Splice_trim_novel_spliceends_5()
2579 nconsecutive++; in Splice_trim_novel_spliceends_5()
2732 nconsecutive++; in Splice_trim_novel_spliceends_3()
2771 nconsecutive++; in Splice_trim_novel_spliceends_3()
2813 nconsecutive++; in Splice_trim_novel_spliceends_3()
[all …]
H A Ddiagpool.c147 Diagpool_push (List_T list, T this, int diagonal, int querystart, int queryend, int nconsecutive) { in Diagpool_push() argument
167 diag->nconsecutive = nconsecutive; in Diagpool_push()
H A Ddiagdef.h12 int nconsecutive; member
H A Ddiagpool.h24 Diagpool_push (List_T list, T this, int diagonal, int querystart, int queryend, int nconsecutive);
H A Dstage3.c7163 nconsecutive = 0;
7164 } else if (++nconsecutive >= SUFFCONSECUTIVE) {
8153 nconsecutive = 0;
13411 int score = 0, nconsecutive;
13488 nconsecutive = 0;
13495 nconsecutive++;
13499 if (nconsecutive > score) {
13500 score = nconsecutive;
13502 nconsecutive = 0;
13508 if (nconsecutive > score) {
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H A Doligoindex_hr.c109 int nconsecutive; member
34277 ptr->nconsecutive = 0; in Oligoindex_get_mappings()
34286 ptr->nconsecutive = 0; in Oligoindex_get_mappings()
34292 ptr->nconsecutive = 0; in Oligoindex_get_mappings()
34295 } else if (++ptr->nconsecutive > ptr->best_nconsecutive) { in Oligoindex_get_mappings()
34298 ptr->best_nconsecutive = ptr->nconsecutive; in Oligoindex_get_mappings()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog461 nconsecutive thresholds as parameters
9605 * gsnap.c, stage3hr.c, stage3hr.h: Using min-nconsecutive criterion instead
21558 * diag.c, diag.h: Added procedure for sorting by nconsecutive
21567 nconsecutive and dominancep
21580 nconsecutive for proceeding to dynamic programming
21582 * oligoindex.c: Reduced requirement for nconsecutive in scanning diagonals.
/dports/editors/textadept/textadept_11.1.linux/modules/lua/
H A Dta_api533 …)\nReturns for `lexer.add_fold_point()` the parameters needed to fold\nconsecutive lines that star…
/dports/editors/textadept/textadept-textadept_11.1/modules/lua/
H A Dta_api533 …)\nReturns for `lexer.add_fold_point()` the parameters needed to fold\nconsecutive lines that star…
/dports/textproc/weka/weka-3-8-5/data/
H A DReutersCorn-train.arff226 …nd Cie\n&lt;BBCZ.Z> said it will omit dividend in 1986 for the second\nconsecutive year.\n It s…
H A DReutersGrain-train.arff226 …nd Cie\n&lt;BBCZ.Z> said it will omit dividend in 1986 for the second\nconsecutive year.\n It s…