Searched refs:newAtomRefs4 (Results 1 – 1 of 1) sorted by relevance
395 Atom[] newAtomRefs4 = new Atom[4]; in copyAndRelabelFragment() local399 newAtomRefs4[i] = AtomParity.hydrogen; in copyAndRelabelFragment()402 newAtomRefs4[i] = AtomParity.deoxyHydrogen; in copyAndRelabelFragment()405 newAtomRefs4[i] = oldToNewAtomMap.get(oldAtom); in copyAndRelabelFragment()408 AtomParity newAtomParity =new AtomParity(newAtomRefs4, atom.getAtomParity().getParity()); in copyAndRelabelFragment()472 Atom[] newAtomRefs4 = new Atom[4]; in copyAndRelabelFragment() local474 newAtomRefs4[i] = oldToNewAtomMap.get(oldAtomRefs4[i]); in copyAndRelabelFragment()476 newBond.setBondStereoElement(newAtomRefs4, bond.getBondStereo().getBondStereoValue()); in copyAndRelabelFragment()