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Searched refs:newRefSize (Results 1 – 3 of 3) sorted by relevance

/dports/biology/vcflib/vcflib-1.0.2/src/
H A Dvcfleftalign.cpp737 int newRefSize = newEndPosition - newPosition; in main() local
738 string newRef = fastaReference.getSubSequence(var.sequenceName, newPosition-1, newRefSize); in main()
741 …int stripFromEnd = (currentWindow + newRefSize) - (stripFromStart + newRefSize) + (var.ref.size() … in main()
/dports/biology/freebayes/freebayes-1.3.5/vcflib-temp/src/
H A Dvcfleftalign.cpp711 int newRefSize = newEndPosition - newPosition; in main() local
712 string newRef = fastaReference.getSubSequence(var.sequenceName, newPosition-1, newRefSize); in main()
715 …int stripFromEnd = (currentWindow + newRefSize) - (stripFromStart + newRefSize) + (var.ref.size() … in main()
/dports/biology/freebayes/freebayes-1.3.5/vcflib/src/
H A Dvcfleftalign.cpp711 int newRefSize = newEndPosition - newPosition; in main() local
712 string newRef = fastaReference.getSubSequence(var.sequenceName, newPosition-1, newRefSize); in main()
715 …int stripFromEnd = (currentWindow + newRefSize) - (stripFromStart + newRefSize) + (var.ref.size() … in main()