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Searched refs:nex (Results 1 – 25 of 1184) sorted by relevance

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/dports/cad/iverilog/verilog-11.0/tgt-fpga/
H A D	d-generic.c	92 xnf_mangle_nexus_name(nex)); in show_design_consts_xnf() 121 ivl_nexus_t nex; in generic_show_logic() local 130 nex = ivl_logic_pin(net, 0); in generic_show_logic() 131 xnf_draw_pin(nex, "O", 'O'); in generic_show_logic() 259 ivl_nexus_t nex; in generic_show_dff() local 265 nex = ivl_lpm_q(net, 0); in generic_show_dff() 271 nex = ivl_lpm_clk(net); in generic_show_dff() 286 ivl_nexus_t nex; in generic_show_cmp_eq() local 335 nex = ivl_lpm_q(net, 0); in generic_show_cmp_eq() 372 ivl_nexus_t nex; in generic_show_mux() local [all …]
/dports/biology/python-nexus/python-nexus-1.63/nexus/test/
H A D	test_regressions.py	`17 nex = NexusReader( 37 self.nex = NexusReader( 64 self.nex = NexusReader( 93 self.nex = NexusReader( 118 self.nex = NexusReader( 126 assert self.nex.taxa.ntaxa == len(self.nex.taxa.taxa) == 3 157 self.nex = NexusReader() 158 self.nex.read_string(""" 202 self.nex = NexusReader( 243 self.nex = NexusReader( [all …]`
H A D	test_handler_TreeHandler.py	`125 nex = NexusReader() 126 nex.read_string(""" 141 nex = NexusReader() 142 nex.read_string(""" 157 nex = NexusReader() 158 nex.read_string(""" 173 nex = NexusReader() 174 nex.read_string(""" 190 nex = NexusReader() 191 nex.read_string(""" [all …]`
H A D	test_handler_DataHandler.py	`43 self.nex = NexusReader( 53 assert self.nex.data == self.nex.data 85 assert self.nex.data.ntaxa == len(self.nex.data.taxa) 98 assert self.nex.data.characters == self.nex.data._characters 155 written = self.nex.write() 167 nex = NexusReader() 169 nex.read_string( 183 nex = NexusReader() 184 nex.read_string( 246 assert self.nex.data.ntaxa == len(expected) == len(self.nex.data.taxa) [all …]`
H A D	test_writer.py	`15 self.nex = NexusWriter() 44 assert 'French' in self.nex.taxa 45 assert 'English' in self.nex.taxa 46 assert 'Latin' in self.nex.taxa 51 assert 'French' in self.nex.taxa 59 self.nex.remove_taxon("French") 61 for char in self.nex.data: 180 nex = NexusWriter() 184 out = nex.make_nexus() 189 nex = NexusWriter() [all …]`
H A D	test_checker.py	`19 nex = NexusReader().read_string( 37 c = DuplicateLabelChecker(nex) 43 nex = NexusReader().read_string( 60 c = LabelChecker(nex) 64 nex = NexusReader().read_string( 77 c = LabelChecker(nex) 84 nex = NexusReader().read_string( 103 nex = NexusReader().read_string( 116 c = EmptyCharacterChecker(nex) 183 c = LowStateCountChecker(nex) [all …]`
H A D	test_reader_manipulation.py	`16 assert self.nex.data.ntaxa == 4 18 assert self.nex.data.ntaxa == 5 35 written = self.nex.write() 41 assert self.nex.data.ntaxa == 4 42 self.nex.data.del_taxon('Simon') 43 assert self.nex.data.ntaxa == 3 59 written = self.nex.write() 69 assert self.nex.data.nchar == 2 84 written = self.nex.write() 90 assert self.nex.data.nchar == 2 [all …]`
H A D	test_handler_TaxaHandler.py	`16 assert 'taxa' in self.nex.blocks 20 assert taxon in self.nex.data.matrix 21 assert taxon in self.nex.blocks['taxa'].taxa 32 self.nex.taxa.taxa[0] = "long name" 33 output = self.nex.taxa.write() 40 assert "end;" in self.nex.taxa.write() 54 nex = NexusReader().read_string(""" 64 nex.taxa.annotations['A'] = '[&!color=#aaaaaa]' 65 nex.taxa.annotations['B'] = '[&!color=#bbbbbb]' 66 nex.taxa.annotations['C'] = '[&!color=#cccccc]' [all …]`
H A D	test_reader.py	`15 assert 'data' in nex.blocks 16 assert 'Simon' in nex.blocks['data'].matrix 33 nex = NexusReader(tmp.name) 34 assert 'data' in nex.blocks 42 nex = NexusReader() 43 nex.read_string(data) 44 assert 'data' in nex.blocks 48 nex = NexusReader().read_string( 59 assert isinstance(nex, NexusReader) 65 assert text == nex.write() [all …]`
H A D	test_maddison.py	20 assert 'taxa' in self.nex.blocks 22 assert taxon in self.nex.blocks['taxa'].taxa 23 assert self.nex.blocks['taxa'].ntaxa == len(self.expected) 26 assert 'characters' in self.nex.blocks 27 assert self.nex.blocks['characters'].nchar == 20 28 assert self.nex.blocks['characters'].ntaxa == 4 29 assert self.nex.blocks['characters'].format['datatype'] == 'dna' 31 assert taxon in self.nex.blocks['characters'].matrix 35 assert self.nex.blocks['data'] == self.nex.blocks['characters'] 38 assert 'trees' in self.nex.blocks [all …]
/dports/biology/p5-Bio-NEXUS/Bio-NEXUS-0.78/
H A D	MANIFEST	`8 data/Liang_et_al_Figure.nex 9 data/SPAN_Family3il.nex 12 data/basic.nex 13 data/color-my-taxsets.nex 21 doc/example1.nex 82 t/data/compliant/01_basic.nex 116 t/data/compliant/KOG0003.nex 157 t/data/compliant/dist_rect.nex 160 t/data/compliant/example1.nex 170 t/data/compliant/temp.nex [all …]`
/dports/math/z3/z3-z3-4.8.13/src/math/lp/
H A D	nex_creator.h	91 nex* simplify(nex* e); 101 nex* clone(const nex* a) { in clone() 190 void operator+=(nex const* n) { m_args.push_back(const_cast<nex>(n)); } 243 nex mk_div(const nex& a, lpvar j); 244 nex * mk_div(const nex& a, const nex& b); 245 nex * mk_div_by_mul(const nex& a, const nex_mul& b); 270 bool gt(const nex& a, const nex& b) const; 271 bool gt(const nex* a, const nex* b) const { return gt(a, b); } in gt() 274 bool gt_for_sort_join_sum(const nex* a, const nex* b) const; 284 static bool equal(const nex, const nex ); [all …]
H A D	cross_nested.h	40 nex* m_e_clone; 60 void run(nex e) { in run() 73 static nex* pop_front(vector<nex*>& front) { in pop_front() 81 nex extract_common_factor(nex* e) { in extract_common_factor() 120 bool proceed_with_common_factor(nex c, vector<nex>& front) { in proceed_with_common_factor() 139 static void push_to_front(vector<nex>& front, nex e) { in push_to_front() 144 static vector<nex> copy_front(const vector<nex>& front) { in copy_front() 417 …void update_front_with_split(nex & e, lpvar j, vector<nex*> & front, nex_sum const a, nex const… in update_front_with_split() 427 bool split_with_var(nex& e, lpvar j, vector<nex> & front) { in split_with_var() 466 nex normalize(nex* a) { in normalize() [all …]
H A D	nex.h	`13 class nex; variable 14 typedef std::function<bool (const nex, const nex)> nex_lt; 42 class nex; variable 51 class nex { 88 virtual ~nex() {} in ~nex() 102 class nex_var : public nex { 134 nex const* m_e; 136 nex ** ee() const { return & const_cast<nex&>(m_e); } in ee() 137 nex & e() { return const_cast<nex*&>(m_e); } in e() 179 class nex_mul : public nex { [all …]`
/dports/math/py-z3-solver/z3-z3-4.8.10/src/math/lp/
H A D	nex_creator.h	91 nex* simplify(nex* e); 101 nex* clone(const nex* a) { in clone() 190 void operator+=(nex const* n) { m_args.push_back(const_cast<nex>(n)); } 243 nex mk_div(const nex& a, lpvar j); 244 nex * mk_div(const nex& a, const nex& b); 245 nex * mk_div_by_mul(const nex& a, const nex_mul& b); 270 bool gt(const nex& a, const nex& b) const; 271 bool gt(const nex* a, const nex* b) const { return gt(a, b); } in gt() 274 bool gt_for_sort_join_sum(const nex* a, const nex* b) const; 284 static bool equal(const nex, const nex ); [all …]
H A D	cross_nested.h	40 nex* m_e_clone; 60 void run(nex e) { in run() 73 static nex* pop_front(vector<nex*>& front) { in pop_front() 81 nex extract_common_factor(nex* e) { in extract_common_factor() 120 bool proceed_with_common_factor(nex c, vector<nex>& front) { in proceed_with_common_factor() 139 static void push_to_front(vector<nex>& front, nex e) { in push_to_front() 144 static vector<nex> copy_front(const vector<nex>& front) { in copy_front() 417 …void update_front_with_split(nex & e, lpvar j, vector<nex*> & front, nex_sum const a, nex const… in update_front_with_split() 427 bool split_with_var(nex& e, lpvar j, vector<nex> & front) { in split_with_var() 466 nex normalize(nex* a) { in normalize() [all …]
H A D	nex.h	`13 class nex; 14 typedef std::function<bool (const nex, const nex)> nex_lt; 42 class nex; 51 class nex { 57 nex() {} 89 virtual ~nex() {} 103 class nex_var : public nex { 135 nex const* m_e; 137 nex ** ee() const { return & const_cast<nex&>(m_e); } 138 nex & e() { return const_cast<nex*&>(m_e); } [all …]`
/dports/cad/feappv/feappv-4.1i/program/
H A D	pfuncs.f	`2 subroutine pfuncs(x,v,val,nex,error) argument 130 nex = nex + 1 138 www(nex) = atan(val) 140 www(nex) = asin(val) 158 www(nex) = exp(val) 160 www(nex) = sin(val) 162 www(nex) = cos(val) 164 www(nex) = tan(val) 166 www(nex) = abs(val) 168 www(nex) = int(val) [all …]`
/dports/cad/iverilog/verilog-11.0/tgt-stub/
H A D	stub.c	239 ivl_nexus_t nex; in show_lpm_arithmetic_pins() local 253 ivl_nexus_t nex; in show_lpm_abs() local 263 if (nex == 0) { in show_lpm_abs() 288 ivl_nexus_t nex; in show_lpm_array() local 295 assert(nex); in show_lpm_array() 298 assert(nex); in show_lpm_array() 505 ivl_nexus_t nex; in show_lpm_ff() local 874 fprintf(out, " S: %p <width=%u>\n", nex, width_of_nexus(nex)); in show_lpm_shift() 960 nex, width_of_nexus(nex), in show_lpm_sfunc() 1015 nex, width_of_nexus(nex)); in show_lpm_ufunc() [all …]
/dports/biology/python-nexus/python-nexus-1.63/nexus/
H A D	checker.py	`25 self.check(nex) 49 def check(self, nex): argument 63 def check(self, nex): argument 64 for taxon in nex.data.taxa: 78 def check(self, nex): argument 98 def check(self, nex): argument 116 def check(self, nex): argument 150 def check(self, nex): argument 178 def check(self, nex): argument 180 ascert = [c for c in nex.data.charlabels if 'ascert' in nex.data.charlabels[c]] [all …]`
/dports/cad/iverilog/verilog-11.0/
H A D	t-dll.cc	`1080 const Nexusnex; in tran() local 1150 const Nexusnex; in sign_extend() local 1206 const Nexusnex; in ureduce() local 1258 const Nexusnex; in net_case_cmp() local 1320 const Nexusnex; in net_sysfunction() local 1483 ivl_assert(net, nex && nex->t_cookie()); in udp() 1517 const Nexusnex; in lpm_abs() local 1561 const Nexusnex; in lpm_add_sub() local 1609 const Nexusnex; in lpm_array_dq() local 1651 const Nexusnex; in lpm_clshift() local [all …]`
/dports/java/springframework31/spring-framework-3.1.4.RELEASE/projects/org.springframework.core/src/test/java/org/springframework/core/
H A D	NestedExceptionTests.java	35 assertNull(nex.getCause()); in testNestedRuntimeExceptionWithNoRootCause() 36 assertEquals(nex.getMessage(), mesg); in testNestedRuntimeExceptionWithNoRootCause() 41 nex.printStackTrace(pw); in testNestedRuntimeExceptionWithNoRootCause() 53 Assert.assertEquals(nex.getCause(), rootCause); in testNestedRuntimeExceptionWithRootCause() 54 assertTrue(nex.getMessage().indexOf(myMessage) != -1); in testNestedRuntimeExceptionWithRootCause() 60 nex.printStackTrace(pw); in testNestedRuntimeExceptionWithRootCause() 71 assertNull(nex.getCause()); in testNestedCheckedExceptionWithNoRootCause() 72 assertEquals(nex.getMessage(), mesg); in testNestedCheckedExceptionWithNoRootCause() 77 nex.printStackTrace(pw); in testNestedCheckedExceptionWithNoRootCause() 89 Assert.assertEquals(nex.getCause(), rootCause); in testNestedCheckedExceptionWithRootCause() [all …]
/dports/biology/hyphy/hyphy-2.5.33/tests/data/
H A D	run-fel.sh	`1 …nex bglobin.nex camelid.nex COXI.nex ENCenv.nex flavNS5.nex HepatitisD.nex HIV_RT.nex HIVvif.nex I…`
H A D	run-meme.sh	`1 …nex bglobin.nex camelid.nex COXI.nex ENCenv.nex flavNS5.nex HepatitisD.nex HIV_RT.nex HIVvif.nex I…`
/dports/cad/iverilog/verilog-11.0/tgt-vvp/
H A D	draw_net_input.c	430 if (ivl_lpm_q(lpm) == nex) { in draw_net_input_drive() 574 res = signal_type_of_nexus(nex); in draw_net_input_x() 613 if (nex == ivl_switch_a(sw)) { in draw_net_input_x() 616 } else if (nex == ivl_switch_b(sw)) { in draw_net_input_x() 620 assert(nex == ivl_switch_enable(sw)); in draw_net_input_x() 656 unsigned wid = width_of_nexus(nex); in draw_net_input_x() 799 const char*draw_net_input(ivl_nexus_t nex) in draw_net_input() argument 802 ivl_nexus_get_private(nex); in draw_net_input() 815 draw_net_input_x(nex, nex_data); in draw_net_input() 823 ivl_nexus_get_private(nex); in draw_island_net_input() [all …]

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