Searched refs:nextMatePairId (Results 1 – 12 of 12) sorted by relevance
605 fL.i2.pairId = mR.pairId = options.nextMatePairId;606 if (++options.nextMatePairId == 0)607 options.nextMatePairId = 1;
2007 mLtmp.pairId = mRtmp.pairId = options.nextMatePairId; in mapSplicedReads()2008 if (++options.nextMatePairId == 0) in mapSplicedReads()2009 options.nextMatePairId = 1; in mapSplicedReads()
104 unsigned nextMatePairId; // use this id for the next mate-pair member194 nextMatePairId = 1; in RazerSOptions()
851 fL.i2.pairId = mR.pairId = options.nextMatePairId;852 if (++options.nextMatePairId == 0)853 options.nextMatePairId = 1;
101 unsigned nextMatePairId; // use this id for the next mate-pair member195 nextMatePairId = 1; in RazerSOptions()
2741 mLtmp.pairId = mRtmp.pairId = options.nextMatePairId; in mapSplicedReads()2742 if (++options.nextMatePairId == 0) in mapSplicedReads()2743 options.nextMatePairId = 1; in mapSplicedReads()
884 fL.i2.pairId = mR.pairId = options.nextMatePairId;885 if (++options.nextMatePairId == 0)886 options.nextMatePairId = 1;
2005 mLtmp.pairId = mRtmp.pairId = options.nextMatePairId; in mapSplicedReads()2006 if (++options.nextMatePairId == 0) in mapSplicedReads()2007 options.nextMatePairId = 1; in mapSplicedReads()
97 unsigned nextMatePairId; // use this id for the next mate-pair member180 nextMatePairId = 1; in RazerSOptions()
863 fL.i2.pairId = mR.pairId = options.nextMatePairId;864 if (++options.nextMatePairId == 0)865 options.nextMatePairId = 1;
2067 mLtmp.pairId = mRtmp.pairId = options.nextMatePairId; in mapSplicedReads()2068 if (++options.nextMatePairId == 0) in mapSplicedReads()2069 options.nextMatePairId = 1; in mapSplicedReads()
97 unsigned nextMatePairId; // use this id for the next mate-pair member185 nextMatePairId = 1; in RazerSOptions()