/dports/biology/gemma/GEMMA-0.98.3/src/ |
H A D | gemma_io.cpp | 903 if (ni_total % 4 == 0) { in ReadFile_bed() 904 n_bit = ni_total / 4; in ReadFile_bed() 1107 if (ni_total % 4 == 0) { in Plink_ReadOneSNP() 1108 n_bit = ni_total / 4; in Plink_ReadOneSNP() 1611 n_bit = ni_total / 4; in PlinkKin() 1959 n_bit = ni_total / 4; in ReadFile_bed() 2095 n_bit = ni_total / 4; in ReadFile_bed() 2982 n_bit = ni_total / 4; in PlinkKin() 3357 ni_total = 0; in ReadFile_beta() 3523 ni_total = max(ni_total, n_total); in ReadFile_beta() [all …]
|
H A D | ldr.cpp | 58 ni_total = cPar.ni_total; in CopyFromParam()
|
H A D | lm.cpp | 61 ni_total = cPar.ni_total; in CopyFromParam() 438 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbam() 536 if (ni_total % 4 == 0) { in AnalyzePlink() 537 n_bit = ni_total / 4; in AnalyzePlink() 539 n_bit = ni_total / 4 + 1; in AnalyzePlink() 570 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink()
|
H A D | vc.cpp | 76 ni_total = cPar.ni_total; in CopyFromParam() 105 cPar.ni_total = ni_total; in CopyToParam() 777 ni_total = max(ni_total, n_total); in ReadFile_cor() 815 ni_total = 0; in ReadFile_beta() 978 ni_total = max(ni_total, n_total); in ReadFile_beta() 1055 ni_total = 0; in ReadFile_cor() 1210 ni_total = max(ni_total, n_total); in ReadFile_cor() 2341 if (ni_total % 4 == 0) { in PlinkXwz() 2342 n_bit = ni_total / 4; in PlinkXwz() 2591 if (ni_total % 4 == 0) { in PlinkXtXwz() [all …]
|
H A D | prdt.cpp | 134 size_t ni_test = u_hat->size, ni_total = G->size1; in AddBV() local 137 gsl_matrix *Gfo = gsl_matrix_alloc(ni_total - ni_test, ni_test); in AddBV() 141 gsl_vector *w = gsl_vector_alloc(ni_total); in AddBV() 145 for (size_t i = 0; i < ni_total; i++) { in AddBV()
|
H A D | ldr.h | 43 size_t ni_total, ns_total; // Total number of individuals & SNPs. variable
|
H A D | lm.h | 45 size_t ni_total, ni_test; // Number of individuals. variable
|
H A D | lmm.cpp | 72 ni_total = cPar.ni_total; in CopyFromParam() 1582 for (size_t i = 0; i < ni_total; ++i) { in Analyze() 1660 gs.resize(ni_total); in AnalyzeBimbam() 1679 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbam() 1737 if (ni_total % 4 == 0) { in AnalyzePlink() 1738 n_bit = ni_total / 4; in AnalyzePlink() 1740 n_bit = ni_total / 4 + 1; in AnalyzePlink() 2285 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbamGXE() 2417 if (ni_total % 4 == 0) { in AnalyzePlinkGXE() 2418 n_bit = ni_total / 4; in AnalyzePlinkGXE() [all …]
|
H A D | mvlmm.h | 58 size_t ni_total, ni_test; // Number of individuals. variable
|
H A D | bslmmdap.h | 53 size_t ni_total, ns_total; // Number of total individuals and SNPs. variable
|
H A D | lmm.h | 71 size_t ni_total, ni_test; // Number of individuals. variable
|
H A D | vc.h | 62 size_t ni_total, ns_total, ns_test; variable
|
H A D | bslmm.h | 70 size_t ni_total, ns_total; // Number of total individuals and SNPs variable
|
H A D | gemma.cpp | 1660 y_prdt = gsl_vector_safe_alloc(cPar.ni_total - cPar.ni_test); in BatchRun() 1672 gsl_matrix *G = gsl_matrix_safe_alloc(cPar.ni_total, cPar.ni_total); in BatchRun() 1898 gsl_matrix *G = gsl_matrix_safe_alloc(cPar.ni_total, cPar.ni_total); in BatchRun() 2014 vec_weight, vec_z2, cPar.ni_total, cPar.ns_total, in BatchRun() 2016 cout << "## number of total individuals = " << cPar.ni_total << endl; in BatchRun() 2030 gsl_vector_set(s, cPar.n_vc, cPar.ni_total); in BatchRun() 3231 << cPar.ni_total << endl; in WriteLog() 3241 << cPar.ni_total << endl; in WriteLog() 3290 outfile << "## number of total individuals = " << cPar.ni_total << endl; in WriteLog()
|
H A D | param.h | 233 size_t ni_total, ni_test, ni_cvt, ni_study, ni_ref; variable
|
H A D | gemma_io.h | 164 vector<double> &vec_z2, size_t &ni_total, size_t &ns_total,
|
H A D | bslmmdap.cpp | 81 ni_total = cPar.ni_total; in CopyFromParam()
|
H A D | mvlmm.cpp | 78 ni_total = cPar.ni_total; in CopyFromParam() 3226 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbam() 3649 if (ni_total % 4 == 0) { in AnalyzePlink() 3650 n_bit = ni_total / 4; in AnalyzePlink() 3652 n_bit = ni_total / 4 + 1; in AnalyzePlink() 3690 if ((i == (n_bit - 1)) && ci_total == (int)ni_total) { in AnalyzePlink() 4212 for (size_t i = 0; i < ni_total; ++i) { in AnalyzeBimbamGXE() 4641 if (ni_total % 4 == 0) { in AnalyzePlinkGXE() 4642 n_bit = ni_total / 4; in AnalyzePlinkGXE() 4644 n_bit = ni_total / 4 + 1; in AnalyzePlinkGXE() [all …]
|
H A D | bslmm.cpp | 91 ni_total = cPar.ni_total; in CopyFromParam() 128 for (size_t i = 0; i < ni_total; ++i) { in WriteBV()
|
H A D | param.cpp | 1031 ni_total = (indicator_idv).size(); in CheckData() 1106 cout << "## number of total individuals = " << ni_total << endl; in CheckData()
|
/dports/comms/gnuradio/gnuradio-3.8.4.0/gr-blocks/lib/ |
H A D | skiphead_impl.cc | 68 uint64_t ni_total = ii + d_nitems; // total items processed so far in general_work() local 69 if (ni_total < d_nitems_to_skip) { // need to skip some more in general_work() 72 (int)std::min(d_nitems_to_skip - ni_total, (uint64_t)(ninput_items - ii)); in general_work()
|
/dports/science/py-gpaw/gpaw-21.6.0/gpaw/wavefunctions/ |
H A D | lcao.py | 964 ni_total = sum([setup.ni for setup in self.setups]) 969 mem.subnode('P [aqMi]', nq * nao * ni_total // self.gd.comm.size)
|