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Searched refs:nni1 (Results 1 – 5 of 5) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/utils/
H A Dpllnni.cpp701 pllNNIMove nni1; in evalNNIForBran() local
702 nni1.p = p; in evalNNIForBran()
703 nni1.nniType = 0; in evalNNIForBran()
706 nni1.z0[i] = p->z[i]; in evalNNIForBran()
707 nni1.z1[i] = p->next->z[i]; in evalNNIForBran()
708 nni1.z2[i] = p->next->next->z[i]; in evalNNIForBran()
709 nni1.z3[i] = q->next->z[i]; in evalNNIForBran()
710 nni1.z4[i] = q->next->next->z[i]; in evalNNIForBran()
712 nni1.likelihood = lh1; in evalNNIForBran()
714 nni1.negLoglDelta = -nni1.loglDelta; in evalNNIForBran()
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/dports/science/lammps/lammps-stable_29Sep2021/src/SMTBQ/
H A Dpair_smtbq.cpp3971 deriv=deriv+coff*(dar[i1]*b[nni1]+a[i1]*dbr[nni1]); in css()
3973 dzeta1=dzeta1+coff*(da1[i1]*b[nni1]+a[i1]*db1[nni1]); in css()
3974 dzeta2=dzeta2+coff*(da2[i1]*b[nni1]+a[i1]*db2[nni1]); in css()
3975 d2zeta11=d2zeta11+coff*(d2a11[i1]*b[nni1]+a[i1]*d2b11[nni1]+ in css()
3977 d2zeta12=d2zeta12+coff*(d2a12[i1]*b[nni1]+a[i1]*d2b12[nni1]+ in css()
3978 da1[i1]*db2[nni1]+da2[i1]*db1[nni1]); in css()
3979 d2zeta22=d2zeta22+coff*(d2a22[i1]*b[nni1]+a[i1]*d2b22[nni1]+ in css()
3981 d2zeta1r=d2zeta1r+coff*(d2a1r[i1]*b[nni1]+dar[i1]*db1[nni1]+ in css()
3982 da1[i1]*dbr[nni1]+a[i1]*d2b1r[nni1]); in css()
3983 d2zeta2r=d2zeta2r+coff*(d2a2r[i1]*b[nni1]+dar[i1]*db2[nni1]+ in css()
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/dports/biology/iqtree/IQ-TREE-2.0.6/pll/
H A DsearchAlgo.c1725 nniMove* myNNI1 = (nniMove*) nni1; in cmp_nni()
1792 nniMove nni1; in getBestNNIForBran() local
1793 nni1.p = p; in getBestNNIForBran()
1794 nni1.nniType = 1; in getBestNNIForBran()
1797 nni1.z[i] = p->z[i]; in getBestNNIForBran()
1798 nni1.z0[i] = z0[i]; in getBestNNIForBran()
1800 nni1.likelihood = lh1; in getBestNNIForBran()
1801 nni1.deltaLH = lh1 - lh0; in getBestNNIForBran()
1855 if (nni1.deltaLH > 0 && nni1.deltaLH >= nni2.deltaLH) { in getBestNNIForBran()
1856 return nni1; in getBestNNIForBran()
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/dports/cad/gplcver/gplcver-2.12a.src/src/
H A Dv_fx2.c2372 int32 nni1, nni2, biti, biti2, prtxpr_rng_bad; in comp_pre_elab_norm_con_ndx() local
2397 if (nni1 >= nni2) in comp_pre_elab_norm_con_ndx()
2404 biti2, nni1, nni2); in comp_pre_elab_norm_con_ndx()
2408 if (nni1 < 0 || nni2 < 0 || biti2 < 0) in comp_pre_elab_norm_con_ndx()
2413 biti = normalize_ndx_(biti2, nni1, nni2); in comp_pre_elab_norm_con_ndx()
2477 int32 nni1, nni2, wid; in set_vec_drvr_type() local
2482 wid = ((nni1 >= nni2) ? (nni1 - nni2 + 1) : (nni2 - nni1 + 1)); in set_vec_drvr_type()
2767 int32 max_drvr_state, nni1, nni2, wid; in find_max_rng_drvr_state() local
2771 wid = ((nni1 >= nni2) ? (nni1 - nni2 + 1) : (nni2 - nni1 + 1)); in find_max_rng_drvr_state()
2892 int32 nni1, nni2, wid; in free_design_ndrvrs() local
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H A Dv_prp.c1540 int32 nni1, nni2, nai1, nai2, bits; in rt_change_rngrep() local
1560 nni1 = (int32) __contab[ncmp->nx1->ru.xvi]; in rt_change_rngrep()
1563 if (nni1 == -1 || nni2 == -2) __arg_terr(__FILE__, __LINE__); in rt_change_rngrep()
1564 np->nwid = ((nni1 >= nni2) ? (nni1 - nni2 + 1) : (nni2 - nni1 + 1)); in rt_change_rngrep()
1576 else { np->vec_scalared = FALSE; np->nwid = 1; nni1 = nni2 = 0; } in rt_change_rngrep()
1595 rap->ni1 = nni1; in rt_change_rngrep()
1610 rdwp->ni1 = nni1; in rt_change_rngrep()
1648 rwp->ni1 = nni1; in rt_change_rngrep()