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Searched refs:nuc_2 (Results 1 – 2 of 2) sorted by relevance

/dports/biology/stacks/stacks-2.4/src/
H A Dmodels.h66 double lr_multinomial_model (double nuc_1, double nuc_2, double nuc_3, double nuc_4);
67 double lr_bounded_multinomial_model (double nuc_1, double nuc_2, double nuc_3, double nuc_4);
292 double total = nuc_1 + nuc_2 + nuc_3 + nuc_4; in lr_multinomial_model_legacy()
300 if (nuc_1 + nuc_2 > 0.0) in lr_multinomial_model_legacy()
301 l_ratio -= ((nuc_1 + nuc_2) * log((nuc_1 + nuc_2) / (2.0 * total))); in lr_multinomial_model_legacy()
312 double lr_multinomial_model (double nuc_1, double nuc_2, double nuc_3, double nuc_4) { in lr_multinomial_model() argument
323 double total = nuc_1 + nuc_2 + nuc_3 + nuc_4; in lr_multinomial_model()
325 assert(nuc_1 >= nuc_2 && nuc_2 >= nuc_3 && nuc_3 >= nuc_4); in lr_multinomial_model()
330 double l_ratio_legacy = lr_multinomial_model_legacy(nuc_1,nuc_2,nuc_3,nuc_4); in lr_multinomial_model()
343 double total = nuc_1 + nuc_2 + nuc_3 + nuc_4; in lr_bounded_multinomial_model()
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H A Dmodels.cc241 double nuc_2 = nuc[1].second; in call_multinomial_fixed() local
261 nuc_1 * log( ((4 * nuc_1 * (1 - epsilon)) + ((nuc_1 + nuc_2) * epsilon)) / in call_multinomial_fixed()
262 … ((4 * p_freq * (nuc_1 + nuc_2) * (1 - epsilon)) + ((nuc_1 + nuc_2) * epsilon)) ); in call_multinomial_fixed()
265 nuc_2 * log( ((4 * nuc_2 * (1 - epsilon)) + ((nuc_1 + nuc_2) * epsilon)) / in call_multinomial_fixed()
266 … ((4 * (1 - p_freq) * (nuc_1 + nuc_2) * (1 - epsilon)) + ((nuc_1 + nuc_2) * epsilon)) ); in call_multinomial_fixed()
271 double n_ratio = nuc_1 / (nuc_1 + nuc_2); in call_multinomial_fixed()