Searched refs:numOmegaCats (Results 1 – 5 of 5) sorted by relevance
5442 for (k=0; k<m->numOmegaCats; k++) in CondLikeScaler_NY98()5458 for (k=0; k<m->numOmegaCats; k++) in CondLikeScaler_NY98()5467 for (k=0; k<m->numOmegaCats; k++) in CondLikeScaler_NY98()5506 for (k=0; k<m->numOmegaCats; k++) in CondLikeScaler_NY98_SSE()5524 for (k=0; k<m->numOmegaCats; k++) in CondLikeScaler_NY98_SSE()5534 for (k=0; k<m->numOmegaCats; k++) in CondLikeScaler_NY98_SSE()7123 for (k=0; k<m->numOmegaCats; k++) in Likelihood_NY98()7146 for (k=0; k<m->numOmegaCats; k++) in Likelihood_NY98()7198 for (k=0; k<m->numOmegaCats; k++) in Likelihood_NY98_SSE()7222 for (k=0; k<m->numOmegaCats; k++) in Likelihood_NY98_SSE()[all …]
6633 m->nCijkParts = m->numOmegaCats; in InitEigenSystemInfo()10148 for (k=1; k<m->numOmegaCats; k++) in PosSelProbs()10165 for (k=0; k<m->numOmegaCats; k++) in PosSelProbs()10176 for (k=0; k<m->numOmegaCats; k++) in PosSelProbs()10230 for (k=0; k<m->numOmegaCats; k++) in PosSelProbs_SSE()10243 for (k=0; k<m->numOmegaCats; k++) in PosSelProbs_SSE()10307 for (k=1; k<m->numOmegaCats; k++) in SiteOmegas()10324 for (k=0; k<m->numOmegaCats; k++) in SiteOmegas()10335 for (k=0; k<m->numOmegaCats; k++) in SiteOmegas()10389 for (k=0; k<m->numOmegaCats; k++) in SiteOmegas_SSE()[all …]
1226 int numOmegaCats; /* number of omega cats (1 if inapplic.) */ member
1198 if (m->numOmegaCats > 1) in TreeLikelihood_Beagle()2718 if (m->numOmegaCats > 1) in TreeLikelihood_BeagleMultiPartition()
17995 m->numOmegaCats = 3; in SetModelInfo()18001 m->numOmegaCats = mp->numM10BetaCats + mp->numM10GammaCats; in SetModelInfo()18006 m->numOmegaCats = 1; in SetModelInfo()18009 m->numTiCats = m->numRateCats * m->numBetaCats * m->numOmegaCats; in SetModelInfo()18085 m->cijkLength *= m->numOmegaCats; in SetModelInfo()18086 m->nCijkParts = m->numOmegaCats; in SetModelInfo()18130 if (m->numOmegaCats > 1) in SetModelInfo()18140 if (m->numOmegaCats > 1) in SetModelInfo()