/dports/devel/gaul/gaul-devel-0.1849-0/src/ |
H A D | ga_chromo.c | 90 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_integer_allocate() 259 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_integer_to_string() 315 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_boolean_allocate() 463 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_boolean_to_string() 499 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_double_allocate() 648 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_double_to_string() 703 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_char_allocate() 884 for (i=0; i<pop->num_chromosomes; i++) in ga_chromosome_bitstring_allocate() 909 for (i=0; i<pop->num_chromosomes; i++) in ga_chromosome_bitstring_deallocate() 977 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_bitstring_to_bytes() [all …]
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H A D | ga_mutate.c | 64 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_singlepoint_drift() 115 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_singlepoint_randomize() 154 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_multipoint() 202 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_allpoint() 266 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_boolean_singlepoint() 303 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_boolean_multipoint() 353 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_singlepoint_drift() 402 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_allpoint() 462 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_singlepoint_randomize() 501 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_multipoint() [all …]
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H A D | ga_seed.c | 58 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_boolean_random() 90 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_boolean_zero() 122 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_integer_random() 155 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_integer_zero() 187 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_char_random() 221 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_double_random() 255 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_double_random_unit_gaussian() 285 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_double_zero() 314 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_printable_random() 346 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_bitstring_random() [all …]
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H A D | ga_similarity.c | 81 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_genome() 149 for (i=0; i<pop->num_chromosomes; i++) in ga_genome_hamming_similarity() 209 if (chromosomeid<0 || chromosomeid>=pop->num_chromosomes) in ga_similarity_bitstring_count_1_alleles() 352 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_tanimoto() 384 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_dice() 416 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_euclidean() 448 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_hamming() 480 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_cosine() 553 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_double_tanimoto() 592 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_double_dice() [all …]
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H A D | ga_compare.c | 57 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_char_hamming() 93 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_char_euclidean() 129 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_integer_hamming() 165 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_integer_euclidean() 201 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_double_hamming() 237 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_double_euclidean() 273 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_boolean_hamming() 309 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_boolean_euclidean() 345 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_bitstring_hamming() 381 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_bitstring_euclidean()
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H A D | ga_crossover.c | 135 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_singlepoints() 167 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_doublepoints() 200 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_mixing() 244 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_mean() 287 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_allele_mixing() 404 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_singlepoints() 436 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_doublepoints() 469 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_mixing() 512 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_allele_mixing() 553 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_char_mixing() [all …]
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H A D | ga_tabu.c | 59 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_integer() 94 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_char() 129 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_boolean() 164 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_double() 199 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_bitstring()
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H A D | ga_core.c | 247 if (num_destroyed != pop->num_chromosomes) in destruct_list() 249 num_destroyed, pop->num_chromosomes); in destruct_list() 291 newpop->num_chromosomes = num_chromosome; in ga_population_new() 427 newpop->num_chromosomes = pop->num_chromosomes; in ga_population_clone_empty() 1119 for (k=0; k<pop->num_chromosomes; k++) 1156 for (k=0; k<pop->num_chromosomes; k++) 1680 for (i=0; i<pop->num_chromosomes; i++) in ga_entity_copy_all_chromosomes() 2144 for (j=0; j<pop->num_chromosomes; j++) 2156 for (j=0; j<pop->num_chromosomes; j++) 2225 for (j=0; j<pop->num_chromosomes; j++) [all …]
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H A D | ga_io.c | 218 fwrite(&(pop->num_chromosomes), sizeof(int), 1, fp); in ga_population_write() 350 if ( WriteFile(file, &(pop->num_chromosomes), sizeof(int), &nwrote, NULL)==0 ) in ga_population_write() 480 int size, stable_size, num_chromosomes, len_chromosomes; /* Input data. */ in ga_population_read() local 508 fread(&num_chromosomes, sizeof(int), 1, fp); in ga_population_read() 514 pop = ga_population_new(stable_size, num_chromosomes, len_chromosomes); in ga_population_read() 613 int size, stable_size, num_chromosomes, len_chromosomes; /* Input data. */ in ga_population_read() local 654 memcpy(&num_chromosomes, buffer, sizeof(int)); in ga_population_read() 662 pop = ga_population_new(stable_size, num_chromosomes, len_chromosomes); in ga_population_read()
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H A D | ga_climbing.c | 141 chromo_id = random_int(pop->num_chromosomes); in ga_random_ascent_hillclimbing() 254 if (chromo_id >= pop->num_chromosomes) in ga_next_ascent_hillclimbing()
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H A D | ga_intrinsics.c | 734 return ((population*) ga_get_population_from_id(*pop))->num_chromosomes; in ga_population_get_chromosomenum_slang() 1245 for (i=0; i<pop->num_chromosomes; i++)
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/dports/games/tycho/species/ |
H A D | warrior.cpp | 73 for(unsigned i=0; i<species()->num_chromosomes(); i++) in ~CWarrior() 79 _chromosome = new CChromosome*[species()->num_chromosomes()]; in create_chromosomes() 80 for(unsigned int i=0; i<species()->num_chromosomes(); i++) { in create_chromosomes() 87 if(i >= species()->num_chromosomes()) in chromosome() 119 CChromosome *end = _chromosome[species()->num_chromosomes()-1]; in calc_len()
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H A D | species.cpp | 160 header.num_chromosomes = warrior.species()->num_chromosomes(); in writeWarrior() 183 for(i=0; i<header.num_chromosomes; ++i) { in writeWarrior() 207 if(warrior.species()->num_chromosomes() != header.num_chromosomes) in readWarrior() 230 for(i=0; i<header.num_chromosomes; ++i) { in readWarrior() 447 for(int j=0; j<num_chromosomes(); j++) { in read_ini() 696 for(int j=0; j<num_chromosomes(); j++) { in selection()
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H A D | species.hpp | 159 unsigned int num_chromosomes() const { return _num_chromosomes; } in num_chromosomes() function in CSpecies 225 unsigned int num_chromosomes, start; member
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H A D | species.ini | 69 num_chromosomes=2 key
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H A D | chromosome.cpp | 57 const unsigned int num = warrior()->species()->num_chromosomes(); in set_len()
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/dports/games/species/species/ |
H A D | warrior.cpp | 73 for(unsigned i=0; i<species()->num_chromosomes(); i++) in ~CWarrior() 79 _chromosome = new CChromosome*[species()->num_chromosomes()]; in create_chromosomes() 80 for(unsigned int i=0; i<species()->num_chromosomes(); i++) { in create_chromosomes() 87 if(i >= species()->num_chromosomes()) in chromosome() 119 CChromosome *end = _chromosome[species()->num_chromosomes()-1]; in calc_len()
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H A D | species.cpp | 160 header.num_chromosomes = warrior.species()->num_chromosomes(); in writeWarrior() 183 for(i=0; i<header.num_chromosomes; ++i) { in writeWarrior() 207 if(warrior.species()->num_chromosomes() != header.num_chromosomes) in readWarrior() 230 for(i=0; i<header.num_chromosomes; ++i) { in readWarrior() 447 for(int j=0; j<num_chromosomes(); j++) { in read_ini() 696 for(int j=0; j<num_chromosomes(); j++) { in selection()
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H A D | species.hpp | 159 unsigned int num_chromosomes() const { return _num_chromosomes; } in num_chromosomes() function in CSpecies 225 unsigned int num_chromosomes, start; member
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H A D | species.ini | 69 num_chromosomes=2 key
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H A D | chromosome.cpp | 57 const unsigned int num = warrior()->species()->num_chromosomes(); in set_len()
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/dports/biology/mapm3/mapm3-3.0_1/mapm/ |
H A D | auto_cmd.c | 50 if (num_chromosomes==0) print("none"); in make_chromosome() 51 else for (i=0; i<num_chromosomes; i++) in make_chromosome() 149 if (num_chromosomes==0) error("no chromosomes presently defined\n"); in list_chroms() 175 if (num_chromosomes==0) error("no chromosomes presently defined\n"); in list_assignments()
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H A D | map_info.h | 220 #define num_chromosomes (chromosome->num_maps) macro
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/dports/devel/gaul/gaul-devel-0.1849-0/src/gaul/ |
H A D | ga_core.h | 292 …int num_chromosomes; /* Number of chromosomes in genotype. FIXME: should be an array of lengths.… member
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/dports/biology/hisat2/hisat2-2.2.1/ |
H A D | hisat2_extract_snps_haplotypes_VCF.py | 258 num_chromosomes = len(genotypes_list[0]) 279 cnv_genotypes = ["" for i in range(num_chromosomes)]
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