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Searched refs:num_chromosomes (Results 1 – 25 of 27) sorted by relevance

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/dports/devel/gaul/gaul-devel-0.1849-0/src/
H A Dga_chromo.c90 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_integer_allocate()
259 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_integer_to_string()
315 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_boolean_allocate()
463 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_boolean_to_string()
499 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_double_allocate()
648 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_double_to_string()
703 for (i=1; i<pop->num_chromosomes; i++) in ga_chromosome_char_allocate()
884 for (i=0; i<pop->num_chromosomes; i++) in ga_chromosome_bitstring_allocate()
909 for (i=0; i<pop->num_chromosomes; i++) in ga_chromosome_bitstring_deallocate()
977 for(i=0; i<pop->num_chromosomes; i++) in ga_chromosome_bitstring_to_bytes()
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H A Dga_mutate.c64 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_singlepoint_drift()
115 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_singlepoint_randomize()
154 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_multipoint()
202 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_integer_allpoint()
266 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_boolean_singlepoint()
303 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_boolean_multipoint()
353 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_singlepoint_drift()
402 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_allpoint()
462 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_singlepoint_randomize()
501 for (i=0; i<pop->num_chromosomes; i++) in ga_mutate_char_multipoint()
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H A Dga_seed.c58 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_boolean_random()
90 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_boolean_zero()
122 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_integer_random()
155 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_integer_zero()
187 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_char_random()
221 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_double_random()
255 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_double_random_unit_gaussian()
285 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_double_zero()
314 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_printable_random()
346 for (chromo=0; chromo<pop->num_chromosomes; chromo++) in ga_seed_bitstring_random()
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H A Dga_similarity.c81 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_genome()
149 for (i=0; i<pop->num_chromosomes; i++) in ga_genome_hamming_similarity()
209 if (chromosomeid<0 || chromosomeid>=pop->num_chromosomes) in ga_similarity_bitstring_count_1_alleles()
352 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_tanimoto()
384 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_dice()
416 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_euclidean()
448 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_hamming()
480 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_bitstring_cosine()
553 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_double_tanimoto()
592 for (i=0; i<pop->num_chromosomes; i++) in ga_similarity_double_dice()
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H A Dga_compare.c57 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_char_hamming()
93 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_char_euclidean()
129 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_integer_hamming()
165 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_integer_euclidean()
201 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_double_hamming()
237 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_double_euclidean()
273 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_boolean_hamming()
309 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_boolean_euclidean()
345 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_bitstring_hamming()
381 for (i=0; i<pop->num_chromosomes; i++) in ga_compare_bitstring_euclidean()
H A Dga_crossover.c135 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_singlepoints()
167 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_doublepoints()
200 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_mixing()
244 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_mean()
287 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_integer_allele_mixing()
404 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_singlepoints()
436 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_doublepoints()
469 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_mixing()
512 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_boolean_allele_mixing()
553 for (i=0; i<pop->num_chromosomes; i++) in ga_crossover_char_mixing()
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H A Dga_tabu.c59 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_integer()
94 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_char()
129 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_boolean()
164 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_double()
199 for (i=0; i<pop->num_chromosomes; i++) in ga_tabu_check_bitstring()
H A Dga_core.c247 if (num_destroyed != pop->num_chromosomes) in destruct_list()
249 num_destroyed, pop->num_chromosomes); in destruct_list()
291 newpop->num_chromosomes = num_chromosome; in ga_population_new()
427 newpop->num_chromosomes = pop->num_chromosomes; in ga_population_clone_empty()
1119 for (k=0; k<pop->num_chromosomes; k++)
1156 for (k=0; k<pop->num_chromosomes; k++)
1680 for (i=0; i<pop->num_chromosomes; i++) in ga_entity_copy_all_chromosomes()
2144 for (j=0; j<pop->num_chromosomes; j++)
2156 for (j=0; j<pop->num_chromosomes; j++)
2225 for (j=0; j<pop->num_chromosomes; j++)
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H A Dga_io.c218 fwrite(&(pop->num_chromosomes), sizeof(int), 1, fp); in ga_population_write()
350 if ( WriteFile(file, &(pop->num_chromosomes), sizeof(int), &nwrote, NULL)==0 ) in ga_population_write()
480 int size, stable_size, num_chromosomes, len_chromosomes; /* Input data. */ in ga_population_read() local
508 fread(&num_chromosomes, sizeof(int), 1, fp); in ga_population_read()
514 pop = ga_population_new(stable_size, num_chromosomes, len_chromosomes); in ga_population_read()
613 int size, stable_size, num_chromosomes, len_chromosomes; /* Input data. */ in ga_population_read() local
654 memcpy(&num_chromosomes, buffer, sizeof(int)); in ga_population_read()
662 pop = ga_population_new(stable_size, num_chromosomes, len_chromosomes); in ga_population_read()
H A Dga_climbing.c141 chromo_id = random_int(pop->num_chromosomes); in ga_random_ascent_hillclimbing()
254 if (chromo_id >= pop->num_chromosomes) in ga_next_ascent_hillclimbing()
H A Dga_intrinsics.c734 return ((population*) ga_get_population_from_id(*pop))->num_chromosomes; in ga_population_get_chromosomenum_slang()
1245 for (i=0; i<pop->num_chromosomes; i++)
/dports/games/tycho/species/
H A Dwarrior.cpp73 for(unsigned i=0; i<species()->num_chromosomes(); i++) in ~CWarrior()
79 _chromosome = new CChromosome*[species()->num_chromosomes()]; in create_chromosomes()
80 for(unsigned int i=0; i<species()->num_chromosomes(); i++) { in create_chromosomes()
87 if(i >= species()->num_chromosomes()) in chromosome()
119 CChromosome *end = _chromosome[species()->num_chromosomes()-1]; in calc_len()
H A Dspecies.cpp160 header.num_chromosomes = warrior.species()->num_chromosomes(); in writeWarrior()
183 for(i=0; i<header.num_chromosomes; ++i) { in writeWarrior()
207 if(warrior.species()->num_chromosomes() != header.num_chromosomes) in readWarrior()
230 for(i=0; i<header.num_chromosomes; ++i) { in readWarrior()
447 for(int j=0; j<num_chromosomes(); j++) { in read_ini()
696 for(int j=0; j<num_chromosomes(); j++) { in selection()
H A Dspecies.hpp159 unsigned int num_chromosomes() const { return _num_chromosomes; } in num_chromosomes() function in CSpecies
225 unsigned int num_chromosomes, start; member
H A Dspecies.ini69 num_chromosomes=2 key
H A Dchromosome.cpp57 const unsigned int num = warrior()->species()->num_chromosomes(); in set_len()
/dports/games/species/species/
H A Dwarrior.cpp73 for(unsigned i=0; i<species()->num_chromosomes(); i++) in ~CWarrior()
79 _chromosome = new CChromosome*[species()->num_chromosomes()]; in create_chromosomes()
80 for(unsigned int i=0; i<species()->num_chromosomes(); i++) { in create_chromosomes()
87 if(i >= species()->num_chromosomes()) in chromosome()
119 CChromosome *end = _chromosome[species()->num_chromosomes()-1]; in calc_len()
H A Dspecies.cpp160 header.num_chromosomes = warrior.species()->num_chromosomes(); in writeWarrior()
183 for(i=0; i<header.num_chromosomes; ++i) { in writeWarrior()
207 if(warrior.species()->num_chromosomes() != header.num_chromosomes) in readWarrior()
230 for(i=0; i<header.num_chromosomes; ++i) { in readWarrior()
447 for(int j=0; j<num_chromosomes(); j++) { in read_ini()
696 for(int j=0; j<num_chromosomes(); j++) { in selection()
H A Dspecies.hpp159 unsigned int num_chromosomes() const { return _num_chromosomes; } in num_chromosomes() function in CSpecies
225 unsigned int num_chromosomes, start; member
H A Dspecies.ini69 num_chromosomes=2 key
H A Dchromosome.cpp57 const unsigned int num = warrior()->species()->num_chromosomes(); in set_len()
/dports/biology/mapm3/mapm3-3.0_1/mapm/
H A Dauto_cmd.c50 if (num_chromosomes==0) print("none"); in make_chromosome()
51 else for (i=0; i<num_chromosomes; i++) in make_chromosome()
149 if (num_chromosomes==0) error("no chromosomes presently defined\n"); in list_chroms()
175 if (num_chromosomes==0) error("no chromosomes presently defined\n"); in list_assignments()
H A Dmap_info.h220 #define num_chromosomes (chromosome->num_maps) macro
/dports/devel/gaul/gaul-devel-0.1849-0/src/gaul/
H A Dga_core.h292 …int num_chromosomes; /* Number of chromosomes in genotype. FIXME: should be an array of lengths.… member
/dports/biology/hisat2/hisat2-2.2.1/
H A Dhisat2_extract_snps_haplotypes_VCF.py258 num_chromosomes = len(genotypes_list[0])
279 cnv_genotypes = ["" for i in range(num_chromosomes)]

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