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Searched refs:oa_tag (Results 1 – 3 of 3) sorted by relevance

/dports/biology/py-pysam/pysam-0.18.0/samtools/
H A D	bam_ampliconclip.c	59 int oa_tag; member 589 static inline int tag_original_data(bam1_t orig, kstring_t oa_tag) { in tag_original_data() argument 596 ks_clear(oa_tag); in tag_original_data() 600 res \|= ksprintf(oa_tag, "%s", bam_aux2Z(old_oa_tag)) < 0; in tag_original_data() 615 res \|= kputw(bam_cigar_oplen(cigar[i]), oa_tag) < 0; in tag_original_data() 616 res \|= kputc(bam_cigar_opchr(cigar[i]), oa_tag) < 0; in tag_original_data() 622 res \|= ksprintf(oa_tag, "%d,;", orig->core.qual) < 0; in tag_original_data() 720 if (param->oa_tag) in bam_clip() 748 if (param->oa_tag) { in bam_clip() 805 if (param->oa_tag) { in bam_clip() [all …]
H A D	bam_ampliconclip.c.pysam.c	61 int oa_tag; member 591 static inline int tag_original_data(bam1_t orig, kstring_t oa_tag) { in tag_original_data() argument 598 ks_clear(oa_tag); in tag_original_data() 602 res \|= ksprintf(oa_tag, "%s", bam_aux2Z(old_oa_tag)) < 0; in tag_original_data() 617 res \|= kputw(bam_cigar_oplen(cigar[i]), oa_tag) < 0; in tag_original_data() 618 res \|= kputc(bam_cigar_opchr(cigar[i]), oa_tag) < 0; in tag_original_data() 624 res \|= ksprintf(oa_tag, "%d,;", orig->core.qual) < 0; in tag_original_data() 722 if (param->oa_tag) in bam_clip() 750 if (param->oa_tag) { in bam_clip() 807 if (param->oa_tag) { in bam_clip() [all …]
/dports/biology/samtools/samtools-1.14/
H A D	bam_ampliconclip.c	59 int oa_tag; member 589 static inline int tag_original_data(bam1_t orig, kstring_t oa_tag) { in tag_original_data() argument 596 ks_clear(oa_tag); in tag_original_data() 600 res \|= ksprintf(oa_tag, "%s", bam_aux2Z(old_oa_tag)) < 0; in tag_original_data() 615 res \|= kputw(bam_cigar_oplen(cigar[i]), oa_tag) < 0; in tag_original_data() 616 res \|= kputc(bam_cigar_opchr(cigar[i]), oa_tag) < 0; in tag_original_data() 622 res \|= ksprintf(oa_tag, "%d,;", orig->core.qual) < 0; in tag_original_data() 720 if (param->oa_tag) in bam_clip() 748 if (param->oa_tag) { in bam_clip() 805 if (param->oa_tag) { in bam_clip() [all …]