| /dports/biology/mafft/mafft-7.267-without-extensions/core/ |
| H A D | genalign11.c | 34 int **ijpi, int **ijpj, int *off1pt, int *off2pt, int endi, int endj ) in gentracking() argument
104 if( jfi == -1 ) *off2pt = 0; else *off2pt = jfi; in gentracking()
113 …_align11( double **n_dynamicmtx, char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt ) in genL__align11() argument
579 *off1pt = *off2pt = 0; in genL__align11()
584 …astverticalw, seq1, seq2, mseq1, mseq2, cpmx1, cpmx2, ijpi, ijpj, off1pt, off2pt, endali, endalj ); in genL__align11()
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| H A D | suboptalign11.c | 42 int **ijpi, int **ijpj, int *off1pt, int *off2pt, int endi, int endj ) in gentracking() argument
99 if( jfi == -1 ) *off2pt = 0; else *off2pt = jfi; in gentracking()
129 double suboptalign11( char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt, LocalHom *l… in suboptalign11() argument
644 …resf = gentracking( used, seq1, seq2, mseq1, mseq2, cpmx1, cpmx2, ijpi, ijpj, off1pt, off2pt, shur… in suboptalign11()
646 …putlocalhom3( mseq1[0], mseq2[0], lhmpt, *off1pt, *off2pt, (int)shuryo[k].wm, strlen( mseq1[0] ) ); in suboptalign11()
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| H A D | Lalign11.c | 94 int **ijp, int *off1pt, int *off2pt, int endi, int endj, in Ltracking() argument
196 if( jfi == -1 ) *off2pt = 0; else *off2pt = jfi; in Ltracking()
208 …_dynamicmtx, double scoreoffset, char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt ) in L__align11() argument
712 *off1pt = *off2pt = 0; in L__align11()
717 …Ltracking( currentw, lastverticalw, seq1, seq2, mseq1, mseq2, ijp, off1pt, off2pt, endali, endalj,… in L__align11()
738 fprintf( stderr, "*off1pt = %d, *off2pt = %d\n", *off1pt, *off2pt ); in L__align11()
1116 *off1pt = *off2pt = 0; in L__align11_noalign()
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| H A D | mltaln.h | 170 …scoringmtx, double scoreoffset, char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt );
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| H A D | functions.h | 156 …scoringmtx, double scoreoffset, char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt );
158 …__align11( double **scoringmtx, char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt );
160 extern double VAalign11( char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt, LocalHom…
161 extern double suboptalign11( char **seq1, char **seq2, int alloclen, int *off1pt, int *off2pt, Loca…
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