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Searched refs:oldLnPrior (Results 1 – 2 of 2) sorted by relevance

/dports/biology/mrbayes/MrBayes-3.2.7/src/
H A Dproposal.c615 N, newTheta, oldTheta, growth, newLnPrior, oldLnPrior; in Move_ClockRate_M() local
693 (*lnPriorRatio) += newLnPrior - oldLnPrior; in Move_ClockRate_M()
1674 (*lnPriorRatio) = x - y + newLnPrior - oldLnPrior; in Move_Extinction()
1763 (*lnPriorRatio) = x - y + newLnPrior - oldLnPrior; in Move_Fossilization()
5197 if (LnCoalescencePriorPr (t, &oldLnPrior, curTheta, oldG) == ERROR) in Move_Growth_M()
13597 oldLnPrior = LnSpeciesTreeProb(chain); in Move_PopSize_M()
13644 if (LnCoalescencePriorPr (t, &oldLnPrior, oldT, growth) == ERROR) in Move_PopSize_M()
13657 (*lnPriorRatio) += newLnPrior - oldLnPrior; in Move_PopSize_M()
15142 *lnPriorRatio = newLnPrior - oldLnPrior; in Move_Speciation()
15144 *lnPriorRatio = -lambdaExp * (newL - oldL) + (newLnPrior - oldLnPrior); in Move_Speciation()
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H A Dmcmc.c7316 MrBFlt oldLnPrior, newLnPrior, theta, N, growth, clockRate, sF, *sR, *eR, *fR; in LogClockTreePriorRatio() local
7354 if (LnCoalescencePriorPr (oldTree, &oldLnPrior, theta, growth) == ERROR) in LogClockTreePriorRatio()
7364 (*lnPriorRatio) = (newLnPrior - oldLnPrior); in LogClockTreePriorRatio()
7373 if (LnBirthDeathPriorPr (oldTree, clockRate, &oldLnPrior, *sR, *eR, sS, sF) == ERROR) in LogClockTreePriorRatio()
7383 (*lnPriorRatio) = (newLnPrior - oldLnPrior); in LogClockTreePriorRatio()
7393 if (LnFossilizationPriorPr (oldTree, clockRate, &oldLnPrior, sR, eR, fR, sF, sS) == ERROR) in LogClockTreePriorRatio()
7403 (*lnPriorRatio) = (newLnPrior - oldLnPrior); in LogClockTreePriorRatio()
7407 oldLnPrior = LnUniformPriorPr(oldTree, clockRate); in LogClockTreePriorRatio()
7409 (*lnPriorRatio) = (newLnPrior - oldLnPrior); in LogClockTreePriorRatio()