/dports/biology/ncbi-toolkit/ncbi/sequin/ |
H A D | sequin4.c | 636 ObjMgrDataPtr omdptop; in DoOneSegFixup() local 802 ObjMgrDataPtr omdptop; in ConvertOneSetToSegSet() local 821 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in ConvertOneSetToSegSet() 2007 ObjMgrDataPtr omdptop; in RepackageParksInPartsSetForEntityID() local 2103 ObjMgrDataPtr omdptop; in UndoSegSet() local 2475 ObjMgrDataPtr omdptop; in RemoveSet() local 2605 ObjMgrDataPtr omdptop; in RemoveSetsInBioseqSet() local 5414 ObjMgrDataPtr omdptop; in ExplodeGroup() local 8332 ObjMgrDataPtr omdptop; in SetWithinGenBankSet() local 8397 ObjMgrDataPtr omdptop; in RemoveExtraneousSets() local [all …]
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H A D | sequin6.c | 1602 ObjMgrDataPtr omdptop; in SegregateItemsGenericCallback() local 1617 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in SegregateItemsGenericCallback() 1630 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in SegregateItemsGenericCallback() 1670 ObjMgrDataPtr omdptop; in SegregateByText_Callback() local 1698 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in SegregateByText_Callback() 1743 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in SegregateByText_Callback() 2059 ObjMgrDataPtr omdptop; in SegregateByFeatureOrDescriptor_Callback() local 2081 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in SegregateByFeatureOrDescriptor_Callback() 2112 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in SegregateByFeatureOrDescriptor_Callback() 2663 ObjMgrDataPtr omdptop; in SegregateById_Callback() local [all …]
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H A D | sequin7.c | 5673 ObjMgrDataPtr omdptop; in RemoveProteinsAndOptionallyRenormalize() local 5690 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in RemoveProteinsAndOptionallyRenormalize() 5713 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in RemoveProteinsAndOptionallyRenormalize() 8217 ObjMgrDataPtr omdptop; in ReorderBioseqSetByAccession() local 8223 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in ReorderBioseqSetByAccession() 8230 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in ReorderBioseqSetByAccession()
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H A D | sequin5.c | 26966 ObjMgrDataPtr omdptop; in AddSepBackToSet() local 27036 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in AddSepBackToSet() 27054 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in AddSepBackToSet() 27190 ObjMgrDataPtr omdptop; in SequesterSets() local 27231 SaveSeqEntryObjMgrData (top_sep, &omdptop, &omdata); in SequesterSets() 27248 RestoreSeqEntryObjMgrData (top_sep, omdptop, &omdata); in SequesterSets() 27300 ObjMgrDataPtr omdptop; in SequesterClickableItem() local 27331 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in SequesterClickableItem() 27339 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in SequesterClickableItem()
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H A D | sequin1.c | 12213 ObjMgrDataPtr omdptop = NULL; in SubtoolModeAsnTextFileRead() local 12235 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in SubtoolModeAsnTextFileRead() 12247 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in SubtoolModeAsnTextFileRead() 12909 ObjMgrDataPtr omdptop = NULL; in SMReadBioseqObj() local 12990 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in SMReadBioseqObj() 13004 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in SMReadBioseqObj()
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H A D | sequin3.c | 17442 ObjMgrDataPtr omdptop; in InsertSetEntityID() local 17455 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in InsertSetEntityID() 17471 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in InsertSetEntityID()
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H A D | sequin2.c | 5613 ObjMgrDataPtr omdptop; in ImportPhylipDialog() local 5661 SaveSeqEntryObjMgrData (ppp->sep, &omdptop, &omdata); in ImportPhylipDialog() 5664 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in ImportPhylipDialog()
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/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | tbl2asn.c | 3401 ObjMgrDataPtr omdptop; in ProcessOneAsn() local 3414 SaveSeqEntryObjMgrData (gsep, &omdptop, &omdata); in ProcessOneAsn() 3435 RestoreSeqEntryObjMgrData (gsep, omdptop, &omdata); in ProcessOneAsn() 3556 ObjMgrDataPtr omdptop; in ProcessRaw2Delt() local 3570 SaveSeqEntryObjMgrData (gsep, &omdptop, &omdata); in ProcessRaw2Delt() 3642 ObjMgrDataPtr omdptop; in ProcessGappedSet() local 3654 SaveSeqEntryObjMgrData (gsep, &omdptop, &omdata); in ProcessGappedSet() 4116 ObjMgrDataPtr omdptop; in ProcessPhrapAce() local 4169 SaveSeqEntryObjMgrData (gsep, &omdptop, &omdata); in ProcessPhrapAce() 4502 ObjMgrDataPtr omdptop; in ProcessDeltaSet() local [all …]
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H A D | nps2gps.c | 1770 ObjMgrDataPtr omdptop; in PromoteNonCoding() local 1818 SaveSeqEntryObjMgrData (top, &omdptop, &omdata); in PromoteNonCoding() 1835 RestoreSeqEntryObjMgrData (top, omdptop, &omdata); in PromoteNonCoding()
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/dports/biology/ncbi-toolkit/ncbi/api/ |
H A D | alignval.c | 610 ObjMgrDataPtr omdptop; in delete_bioseqs() local 618 SaveSeqEntryObjMgrData (sep_top, &omdptop, &omdata); in delete_bioseqs() 640 RestoreSeqEntryObjMgrData (sep_top, omdptop, &omdata); in delete_bioseqs()
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H A D | sqnutil2.c | 19145 ObjMgrDataPtr omdptop; in RemoveDuplicateNestedSetsForEntityIDNoUpdate() local 26312 ObjMgrDataPtr omdp, omdptop = NULL; in SaveSeqEntryObjMgrData() local 26322 if (omdptop == NULL) return; in SaveSeqEntryObjMgrData() 26323 if (omdptop->EntityID == 0) return; in SaveSeqEntryObjMgrData() 26324 *omdptopptr = omdptop; in SaveSeqEntryObjMgrData() 26326 omdptop->userdata = NULL; in SaveSeqEntryObjMgrData() 26345 if (omdpnew != omdptop) { in RestoreSeqEntryObjMgrData() 26347 omdptop->EntityID = 0; in RestoreSeqEntryObjMgrData() 26377 ObjMgrDataPtr omdptop; in AddSeqEntryToSeqEntry() local 26575 ObjMgrDataPtr omdptop; in ReplaceSeqEntryWithSeqEntry() local [all …]
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H A D | sqnutil1.c | 751 ObjMgrDataPtr omdptop; in RenormalizeNucProtSets() local 777 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in RenormalizeNucProtSets() 830 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in RenormalizeNucProtSets() 866 ObjMgrDataPtr omdptop; in RemoveSingleItemSet() local 891 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in RemoveSingleItemSet() 941 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in RemoveSingleItemSet() 2167 ObjMgrDataPtr omdptop; in PromoteXrefsExEx() local 2283 SaveSeqEntryObjMgrData (target, &omdptop, &omdata); in PromoteXrefsExEx() 2447 RestoreSeqEntryObjMgrData (target, omdptop, &omdata); in PromoteXrefsExEx() 2671 SaveSeqEntryObjMgrData (target, &omdptop, &omdata); in PromoteXrefsExEx() [all …]
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H A D | sqnutil4.c | 19005 ObjMgrDataPtr omdptop; in PromoteSingletonSetsInSet() local 19017 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in PromoteSingletonSetsInSet() 19047 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in PromoteSingletonSetsInSet() 19055 ObjMgrDataPtr omdptop; in MakeGroupsForUniqueValues() local 19074 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in MakeGroupsForUniqueValues() 19126 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in MakeGroupsForUniqueValues() 19251 ObjMgrDataPtr omdptop; in MoveSequencesFromSetToWrapper() local 19272 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in MoveSequencesFromSetToWrapper() 19277 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in MoveSequencesFromSetToWrapper()
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H A D | sqnutils.h | 161 NLM_EXTERN void RestoreSeqEntryObjMgrData (SeqEntryPtr target, ObjMgrDataPtr omdptop, ObjMgr…
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H A D | sqnutil3.c | 3384 ObjMgrDataPtr omdptop; in ConvertSegSetsToDeltaSequencesInt() local 3401 SaveSeqEntryObjMgrData (sep, &omdptop, &omdata); in ConvertSegSetsToDeltaSequencesInt() 3461 RestoreSeqEntryObjMgrData (sep, omdptop, &omdata); in ConvertSegSetsToDeltaSequencesInt() 26508 ObjMgrDataPtr omdptop; in RemoveDoubleGenBankSets() local 26520 SaveSeqEntryObjMgrData (top_sep, &omdptop, &omdata); in RemoveDoubleGenBankSets() 26530 RestoreSeqEntryObjMgrData (top_sep, omdptop, &omdata); in RemoveDoubleGenBankSets()
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/dports/biology/ncbi-toolkit/ncbi/desktop/ |
H A D | salsa.c | 6981 ObjMgrDataPtr omdptop; in delete_bioseqs() local 6989 SaveSeqEntryObjMgrData (sep_top, &omdptop, &omdata); in delete_bioseqs() 7011 RestoreSeqEntryObjMgrData (sep_top, omdptop, &omdata); in delete_bioseqs()
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