Searched refs:opt_clock_r (Results 1 – 4 of 4) sorted by relevance
276 if(tree->mod->s_opt->opt_clock_r == NO) return; in MCMC_Clock_R()1547 if(tree->mod->s_opt->opt_clock_r == YES) in MCMC_Updown_T_Cr()1597 if(tree->mod->s_opt->opt_clock_r == YES) tree->rates->clock_r *= mult; in MCMC_Updown_T_Cr()1812 if(tree->mod->s_opt->opt_clock_r == YES) in MCMC_Tree_Rates()1825 (tree->mod->s_opt->opt_clock_r == NO)) in MCMC_Tree_Rates()2051 if(tree->mod->s_opt->opt_clock_r == YES) in MCMC_Updown_Nu_Cr()2096 if(tree->mod->s_opt->opt_clock_r == YES) tree->rates->clock_r *= mult; in MCMC_Updown_Nu_Cr()3122 …if(tree->mod->s_opt->opt_clock_r == YES) tree->rates->clock_r = u * (1.0 - tree->rates->min_clock)… in MCMC_Randomize_Clock_Rate()
1345 short int opt_clock_r; member
256 if(select < 3) mixt_tree->mod->s_opt->opt_clock_r = YES; in PHYREX_XML()257 else mixt_tree->mod->s_opt->opt_clock_r = NO; in PHYREX_XML()
732 s_opt->opt_clock_r = YES; in Set_Defaults_Optimiz()