Searched refs:opt_cov_alpha (Results 1 – 6 of 6) sorted by relevance
610 io->mod->s_opt->opt_cov_alpha = YES; in Read_Command_Line()1583 io->mod->s_opt->opt_cov_alpha = 0; in Read_Command_Line()1587 if((io->mod->s_opt->opt_cov_free_rates) && (io->mod->s_opt->opt_cov_alpha)) in Read_Command_Line()
121 io->mod->s_opt->opt_cov_alpha = 0; in Launch_Interface()125 if((io->mod->s_opt->opt_cov_free_rates) && (io->mod->s_opt->opt_cov_alpha)) in Launch_Interface()
1188 tree->mod->s_opt->opt_cov_alpha = 1; in M4_Site_Branch_Classification_Experiment()
716 s_opt->opt_cov_alpha = NO; in Set_Defaults_Optimiz()3746 if(mod->s_opt->opt_cov_alpha) m4mod->alpha = 1.0; in M4_Init_Model()
1342 short int opt_cov_alpha; member
1111 if(tree->mod->s_opt->opt_cov_alpha) in Optimiz_All_Free_Param()