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Searched refs:opt_cov_alpha (Results 1 – 6 of 6) sorted by relevance

/dports/biology/phyml/phyml-3.3.20200621/src/
H A Dcl.c610 io->mod->s_opt->opt_cov_alpha = YES; in Read_Command_Line()
1583 io->mod->s_opt->opt_cov_alpha = 0; in Read_Command_Line()
1587 if((io->mod->s_opt->opt_cov_free_rates) && (io->mod->s_opt->opt_cov_alpha)) in Read_Command_Line()
H A Dinterface.c121 io->mod->s_opt->opt_cov_alpha = 0; in Launch_Interface()
125 if((io->mod->s_opt->opt_cov_free_rates) && (io->mod->s_opt->opt_cov_alpha)) in Launch_Interface()
H A Dm4.c1188 tree->mod->s_opt->opt_cov_alpha = 1; in M4_Site_Branch_Classification_Experiment()
H A Dinit.c716 s_opt->opt_cov_alpha = NO; in Set_Defaults_Optimiz()
3746 if(mod->s_opt->opt_cov_alpha) m4mod->alpha = 1.0; in M4_Init_Model()
H A Dutilities.h1342 short int opt_cov_alpha; member
H A Doptimiz.c1111 if(tree->mod->s_opt->opt_cov_alpha) in Optimiz_All_Free_Param()