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Searched refs:opt_cut (Results 1 – 12 of 12) sorted by relevance

/dports/biology/fasta3/fasta-36.3.8/src/
H A Ddropnfa.h51 int c_gap, opt_cut; member
H A Ddropnfa.c586 int opt_cut, c_gap; in do_fasta() local
627 …opt_cut = ELK_to_s(ppst->param_u.fa.E_band_opt*ktup_sq, n0, n1, ppst->pLambda, ppst->pK, ppst->pH); in do_fasta()
632 opt_cut = ppst->param_u.fa.optcut; in do_fasta()
807 if ( /* shuff_flg || */ rst->score[0] > opt_cut ) { in do_fasta()
H A Ddropfx2.c629 int c_gap, opt_cut; local
701 …opt_cut = ELK_to_s(ppst->param_u.fa.E_band_opt*ktup_sq, n0_eff, n1, ppst->pLambda, ppst->pK, ppst-…
705 opt_cut = ppst->param_u.fa.optcut;
929 if ( /* shuff_flg || */ rst->score[0] > opt_cut) {
948 if ( /* shuff_flg || */ rst->score[0] > opt_cut) {
H A Ddropfx.c627 int c_gap, opt_cut; local
699 …opt_cut = ELK_to_s(ppst->param_u.fa.E_band_opt*ktup_sq, n0_eff, n1, ppst->pLambda, ppst->pK, ppst-…
703 opt_cut = ppst->param_u.fa.optcut;
927 if ( /* shuff_flg || */ rst->score[0] > opt_cut) {
946 if ( /* shuff_flg || */ rst->score[0] > opt_cut) {
H A Ddropfz3.c817 int c_gap, opt_cut; local
857 …opt_cut = ELK_to_s(ppst->param_u.fa.E_band_opt*ktup_sq*2.0, n0, n1, ppst->pLambda, ppst->pK, ppst-…
862 opt_cut = ppst->param_u.fa.optcut;
1048 if (/* shuff_flg || */ rst->score[0] > opt_cut) {
H A Ddropfz2.c817 int c_gap, opt_cut; local
857 …opt_cut = ELK_to_s(ppst->param_u.fa.E_band_opt*ktup_sq*2.0, n0, n1, ppst->pLambda, ppst->pK, ppst-…
862 opt_cut = ppst->param_u.fa.optcut;
1048 if (/* shuff_flg || */ rst->score[0] > opt_cut) {
/dports/biology/vsearch/vsearch-2.17.1/src/
H A Dcut.cc260 h = fasta_open(opt_cut); in cut()
H A Dvsearch.h306 extern char * opt_cut;
H A Dvsearch.cc99 char * opt_cut; variable
747 opt_cut = nullptr; in args_init()
2377 opt_cut = optarg; in args_init()
5437 } else if (opt_cut) { in main()
/dports/biology/fasta3/fasta-36.3.8/doc/
H A Dreadme.v32t0157 Corrected problem with opt_cut initialization that only appeared
H A Dreadme.v33t01018 Corrected problem with opt_cut initialization that only appeared
H A Dreadme.v361820 Implement Lambda/K/H based c_gap, opt_cut in dropnfa.c, dropfx.c