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Searched refs:opt_gm (Results 1 – 16 of 16) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_builder.c374 static int calibrate (P7_BUILDER *bld, P7_HMM *hmm, P7_BG *bg, P7_PROFILE **opt_gm, P…
415 P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, in p7_Builder() argument
440 if ((status = calibrate (bld, hmm, bg, opt_gm, opt_om)) != eslOK) goto ERROR; in p7_Builder()
466 if (opt_gm != NULL) p7_profile_Destroy(*opt_gm); in p7_Builder()
496 P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om) in p7_SingleBuilder() argument
509 …if ((status = calibrate(bld, hmm, bg, opt_gm, opt_om)) … in p7_SingleBuilder()
538 if (opt_gm != NULL) p7_profile_Destroy(*opt_gm); in p7_SingleBuilder()
1005 calibrate(P7_BUILDER *bld, P7_HMM *hmm, P7_BG *bg, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om) in calibrate() argument
1009 if (opt_gm != NULL) *opt_gm = NULL; in calibrate()
1012 if ((status = p7_Calibrate(hmm, bld, &(bld->r), &bg, opt_gm, opt_om)) != eslOK) goto ERROR; in calibrate()
H A Dhmmer.h1511 …A *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt…
1512 … *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt…
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_builder.c374 static int calibrate (P7_BUILDER *bld, P7_HMM *hmm, P7_BG *bg, P7_PROFILE **opt_gm, P…
415 P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, in p7_Builder() argument
440 if ((status = calibrate (bld, hmm, bg, opt_gm, opt_om)) != eslOK) goto ERROR; in p7_Builder()
466 if (opt_gm != NULL) p7_profile_Destroy(*opt_gm); in p7_Builder()
496 P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om) in p7_SingleBuilder() argument
509 …if ((status = calibrate(bld, hmm, bg, opt_gm, opt_om)) … in p7_SingleBuilder()
538 if (opt_gm != NULL) p7_profile_Destroy(*opt_gm); in p7_SingleBuilder()
1005 calibrate(P7_BUILDER *bld, P7_HMM *hmm, P7_BG *bg, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om) in calibrate() argument
1009 if (opt_gm != NULL) *opt_gm = NULL; in calibrate()
1012 if ((status = p7_Calibrate(hmm, bld, &(bld->r), &bg, opt_gm, opt_om)) != eslOK) goto ERROR; in calibrate()
H A Dhmmer.h1511 …A *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt…
1512 … *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt…
/dports/net-mgmt/pnp-icinga2/pnp4nagios-0.6.26/scripts/
H A Dprocess_perfdata.pl.in96 "gearman:s" => \$opt_gm,
119 if ( defined($opt_gm) ) {
147 if( ! defined($opt_gm) ){
157 if($opt_gm =~ /:\d+/ ){
158 $conf{'GEARMAN_HOST'} = $opt_gm;
181 if (defined $opt_gm) {
234 if(defined $opt_gm){
295 if ( keys( %NAGIOS ) == 1 && defined($opt_gm) ) {
299 if ( ! defined($NAGIOS{PERFDATA}) && ! defined($opt_gm) ) {
1260 if ( defined ( $opt_gm ) ){
[all …]
/dports/net-mgmt/pnp/pnp4nagios-0.6.26/scripts/
H A Dprocess_perfdata.pl.in96 "gearman:s" => \$opt_gm,
119 if ( defined($opt_gm) ) {
147 if( ! defined($opt_gm) ){
157 if($opt_gm =~ /:\d+/ ){
158 $conf{'GEARMAN_HOST'} = $opt_gm;
181 if (defined $opt_gm) {
234 if(defined $opt_gm){
295 if ( keys( %NAGIOS ) == 1 && defined($opt_gm) ) {
299 if ( ! defined($NAGIOS{PERFDATA}) && ! defined($opt_gm) ) {
1260 if ( defined ( $opt_gm ) ){
[all …]
/dports/biology/infernal/infernal-1.1.3/src/
H A Dcm_pipeline.c27 …aram, const ESL_SQ *sq, int64_t *ws, int64_t *we, int nwin, P7_HMM **opt_hmm, P7_PROFILE **opt_gm,
1535 …li_p7_env_def(pli, om, bg, p7_evparam, sq2search, ws, we, nwin, opt_hmm, opt_gm, opt_Rgm, opt_Lgm,… in cm_Pipeline()
2892 …P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_PROFILE **opt_Rgm, P7_PROFILE **opt_Lgm, P7_PROFILE **op… in pli_p7_env_def() argument
2969 ((use_gm == TRUE && (*opt_gm) == NULL) || in pli_p7_env_def()
2980 if((*opt_gm) == NULL) { /* we need gm to create Lgm, Rgm or Tgm */ in pli_p7_env_def()
2981 *opt_gm = p7_profile_Create((*opt_hmm)->M, pli->abc); in pli_p7_env_def()
2982 p7_ProfileConfig(*opt_hmm, bg, *opt_gm, 100, p7_GLOCAL); in pli_p7_env_def()
2985 *opt_Rgm = p7_profile_Clone(*opt_gm); in pli_p7_env_def()
2989 *opt_Lgm = p7_profile_Clone(*opt_gm); in pli_p7_env_def()
2993 *opt_Tgm = p7_profile_Clone(*opt_gm); in pli_p7_env_def()
[all …]
H A Dinfernal.h2953 …L_SQ *sq, CM_TOPHITS *hitlist, int in_rc, P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_PROFILE **opt_…
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/
H A Dp7_oprofile.c1746 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om) in p7_oprofile_Sample() argument
1762 if (opt_gm != NULL) *opt_gm = gm; else p7_profile_Destroy(gm); in p7_oprofile_Sample()
1768 if (opt_gm != NULL) *opt_gm = NULL; in p7_oprofile_Sample()
H A Dimpl_sse.h292 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om);
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/
H A Dp7_oprofile.c1673 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om) in p7_oprofile_Sample() argument
1689 if (opt_gm != NULL) *opt_gm = gm; else p7_profile_Destroy(gm); in p7_oprofile_Sample()
1695 if (opt_gm != NULL) *opt_gm = NULL; in p7_oprofile_Sample()
H A Dimpl_vmx.h284 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om);
/dports/biology/hmmer/hmmer-3.3/src/impl_sse/
H A Dp7_oprofile.c1746 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om) in p7_oprofile_Sample() argument
1762 if (opt_gm != NULL) *opt_gm = gm; else p7_profile_Destroy(gm); in p7_oprofile_Sample()
1768 if (opt_gm != NULL) *opt_gm = NULL; in p7_oprofile_Sample()
H A Dimpl_sse.h292 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om);
/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/
H A Dp7_oprofile.c1673 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om) in p7_oprofile_Sample() argument
1689 if (opt_gm != NULL) *opt_gm = gm; else p7_profile_Destroy(gm); in p7_oprofile_Sample()
1695 if (opt_gm != NULL) *opt_gm = NULL; in p7_oprofile_Sample()
H A Dimpl_vmx.h284 P7_HMM **opt_hmm, P7_PROFILE **opt_gm, P7_OPROFILE **ret_om);