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Searched refs:opt_maxaccepts (Results 1 – 6 of 6) sorted by relevance

/dports/biology/vsearch/vsearch-2.17.1/src/
H A Dsearch.cc668 if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) { in search_prep()
669 opt_maxaccepts = seqcount; in search_prep()
673 tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; in search_prep()
H A Dcluster.cc681 if (x < opt_maxaccepts + opt_maxrejects - 1) in cluster_core_parallel()
686 if (si->hit_count >= opt_maxaccepts + opt_maxrejects - 1) in cluster_core_parallel()
736 (si->accepts < opt_maxaccepts) && in cluster_core_parallel()
1246 if ((opt_maxaccepts == 0) || (opt_maxaccepts > seqcount)) { in cluster()
1247 opt_maxaccepts = seqcount; in cluster()
1251 tophits = opt_maxrejects + opt_maxaccepts + MAXDELAYED; in cluster()
H A Dsearchcore.cc563 if ((si->rejects < opt_maxrejects) && (si->accepts < opt_maxaccepts)) in align_delayed()
699 while ((si->finalized + delayed < opt_maxaccepts + opt_maxrejects - 1) && in search_onequery()
701 (si->accepts < opt_maxaccepts) && in search_onequery()
H A Dvsearch.h468 extern int64_t opt_maxaccepts;
H A Dvsearch.cc261 int64_t opt_maxaccepts; variable
859 opt_maxaccepts = 1; in args_init()
1469 opt_maxaccepts = args_getlong(optarg); in args_init()
4155 if (opt_maxaccepts < 0) { in args_init()
H A Dchimera.cc1687 opt_maxaccepts = few; in chimera()
1704 tophits = opt_maxaccepts + opt_maxrejects; in chimera()