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Searched refs:organelle (Results 1 – 25 of 199) sorted by relevance

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/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/lib/Bio/DB/SoapEUtilities/FetchAdaptor/
H A Dspecies.pm143 $abbr_name, $organelle);
200 $make->organelle($organelle) if $organelle;
H A Dseq.pm348 $abbr_name, $organelle);
360 ($organelle, $abbr_name, $common) = ($1, $2, $3); # optional
403 $make->organelle($organelle) if $organelle;
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/
H A Dautodef.cpp692 string organelle; in OrganelleByGenome() local
698 organelle = "nucleomorph"; in OrganelleByGenome()
704 organelle = "apicoplast"; in OrganelleByGenome()
707 organelle = "chloroplast"; in OrganelleByGenome()
716 organelle = "plastid"; in OrganelleByGenome()
719 organelle = "cyanelle"; in OrganelleByGenome()
722 organelle = "leucoplast"; in OrganelleByGenome()
725 organelle = "proplastid"; in OrganelleByGenome()
731 return organelle; in OrganelleByGenome()
922 string organelle; in x_GetOneNonFeatureClause() local
[all …]
H A Dcreate_defline.cpp2262 const char * organelle = s_proteinOrganellePrefix [m_Genome]; in x_SetTitleFromProteinIdx() local
2263 if ( organelle[0] != '\0' && ! taxname.empty() in x_SetTitleFromProteinIdx()
2266 m_MainTitle += organelle; in x_SetTitleFromProteinIdx()
2459 const char * organelle = s_proteinOrganellePrefix [m_Genome]; in x_SetTitleFromProtein() local
2460 if ( organelle[0] != '\0' && ! taxname.empty() in x_SetTitleFromProtein()
2463 m_MainTitle += organelle; in x_SetTitleFromProtein()
3101 const char * organelle = s_proteinOrganellePrefix [m_Genome]; in x_AdjustProteinTitleSuffixIdx() local
3102 if ( organelle[0] != '\0' && ! taxname.empty() in x_AdjustProteinTitleSuffixIdx()
3105 m_MainTitle += organelle; in x_AdjustProteinTitleSuffixIdx()
3255 if ( organelle[0] != '\0' && ! taxname.empty() in x_AdjustProteinTitleSuffix()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/
H A Dautodef.cpp692 string organelle; in OrganelleByGenome() local
698 organelle = "nucleomorph"; in OrganelleByGenome()
704 organelle = "apicoplast"; in OrganelleByGenome()
707 organelle = "chloroplast"; in OrganelleByGenome()
716 organelle = "plastid"; in OrganelleByGenome()
719 organelle = "cyanelle"; in OrganelleByGenome()
722 organelle = "leucoplast"; in OrganelleByGenome()
725 organelle = "proplastid"; in OrganelleByGenome()
731 return organelle; in OrganelleByGenome()
922 string organelle; in x_GetOneNonFeatureClause() local
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/dports/misc/py-orange3-datafusion/orange3-datafusion-0.1.11-7-g69aa51c/doc/data-yeast/
H A Dontology_structure.tab1 …organelle inheritance GO:0008134 | transcription factor binding GO:0000746 | conjugation GO:000803…
30 …0 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 GO:0048308 | organelle inheritance
34 ….000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 GO:0070925 | organelle assembly
98 …-0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 GO:0048284 | organelle fusion
115 … -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 GO:0033043 | regulation of organelle organization
122 …0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 -0.000 GO:0048285 | organelle fission
H A Dgene_annotations.tab1 …organelle inheritance GO:0008134 | transcription factor binding GO:0000746 | conjugation GO:000803…
/dports/biology/emboss/EMBOSS-6.6.0/emboss/
H A Dserver.ebeye159 …domain_source, gene, gene_synonym, id, keywords, length, molecule_type, organelle, organism, organ…
160 …domain_source, gene, gene_synonym, id, keywords, length, molecule_type, organelle, organism, organ…
177 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
178 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
186 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
187 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
195 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
196 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
204 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
205 …e_synonym, id, keywords, last_modification_date, length, molecule_type, organelle, organism, organ…
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/Handler/
H A DGenericRichSeqHandler.pm841 my ($organelle,$abbr_name, $common);
848 ($organelle, $abbr_name, $common) = ($1, $2, $3); # optional
854 $organelle ||= '';
864 $organelle && $make->organelle($organelle);
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqfeat/
H A DBioSource.cpp173 TGenomeMap::const_iterator g_iter = sm_GenomeKeys.find (organelle.c_str ()); in GetGenomeByOrganelle()
175 if (NStr::Equal(organelle, "mitochondrial")) { in GetGenomeByOrganelle()
184 if (NStr::StartsWith(organelle, "mitochondrial", use_case)){ in GetGenomeByOrganelle()
190 if (NStr::StartsWith(organelle, match.c_str(), use_case)) { in GetGenomeByOrganelle()
191 if (organelle.length() == match.length() in GetGenomeByOrganelle()
192 … || (match.length() < organelle.length() && isspace(organelle[match.length()]))) { in GetGenomeByOrganelle()
200 if (NStr::Equal(organelle, "mitochondrial", use_case)) { in GetGenomeByOrganelle()
204 if (NStr::Equal(organelle, g_iter->first, use_case)) { in GetGenomeByOrganelle()
218 string organelle = kEmptyStr; in GetOrganelleByGenome() local
225 organelle = g_iter->first; in GetOrganelleByGenome()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqfeat/
H A DBioSource.cpp173 TGenomeMap::const_iterator g_iter = sm_GenomeKeys.find (organelle.c_str ()); in GetGenomeByOrganelle()
175 if (NStr::Equal(organelle, "mitochondrial")) { in GetGenomeByOrganelle()
184 if (NStr::StartsWith(organelle, "mitochondrial", use_case)){ in GetGenomeByOrganelle()
190 if (NStr::StartsWith(organelle, match.c_str(), use_case)) { in GetGenomeByOrganelle()
191 if (organelle.length() == match.length() in GetGenomeByOrganelle()
192 … || (match.length() < organelle.length() && isspace(organelle[match.length()]))) { in GetGenomeByOrganelle()
200 if (NStr::Equal(organelle, "mitochondrial", use_case)) { in GetGenomeByOrganelle()
204 if (NStr::Equal(organelle, g_iter->first, use_case)) { in GetGenomeByOrganelle()
218 string organelle = kEmptyStr; in GetOrganelleByGenome() local
225 organelle = g_iter->first; in GetOrganelleByGenome()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/
H A Dftanet.h55 void fta_fix_orgref(ParserPtr pp, objects::COrg_ref& org_ref, unsigned char* drop, char* organelle);
H A Dfta_src.cpp101 char* organelle; member
126 organelle(NULL), in _source_feat_blk()
352 if(sfbp->organelle != NULL) in SourceFeatBlkFree()
353 MemFree(sfbp->organelle); in SourceFeatBlkFree()
578 const Char* organelle; in SourceFeatStructFillIn() local
598 organelle = NULL; in SourceFeatStructFillIn()
660 if(organelle == NULL) in SourceFeatStructFillIn()
661 organelle = val_ptr; in SourceFeatStructFillIn()
788 if(organelle != NULL && sfbp->organelle == NULL) in SourceFeatStructFillIn()
789 sfbp->organelle = StringSave(organelle); in SourceFeatStructFillIn()
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/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/SeqIO/
H A Dgenbank.pm1061 my ($on, $sn, $cn) = ($spec->can('organelle') ? $spec->organelle : '',
1554 $class_lines, $source_flag, $abbr_name, $organelle, $sl );
1597 ($organelle, $abbr_name, $common) = ($1, $2, $3); # optional
1647 $make->organelle($organelle) if $organelle;
/dports/biology/py-biopython/biopython-1.79/Bio/SwissProt/
H A D__init__.py110 self.organelle = ""
320 record.organelle += line[5:]
383 record.organelle = record.organelle.rstrip()
/dports/biology/p5-Bio-DB-NCBIHelper/Bio-DB-NCBIHelper-1.7.7/bin/
H A Dbp_query_entrez_taxa79 print " organelle is ", $node->organelle, "\n";
/dports/biology/p5-BioPerl/BioPerl-1.7.7/lib/Bio/
H A DSpecies.pm150 defined $org && $self->organelle($org);
561 sub organelle { subroutine
/dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/datatype/
H A DDNAInfo.h155 QString organelle; variable
/dports/biology/readseq/rez/
H A DFeatures.properties106 organelle
/dports/biology/emboss/EMBOSS-6.6.0/emboss/data/
H A DEtags.refseqp62 organelle QTEXT
H A DEfeatures.refseqp167 /organelle
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A Day149291.gb28 /organelle="mitochondrion"
H A DU71225.gb28 /organelle="mitochondrion"
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objects/seqfeat/
H A DBioSource.hpp71 …static CBioSource::EGenome GetGenomeByOrganelle (const string& organelle, NStr::ECase use_case = N…
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objects/seqfeat/
H A DBioSource.hpp71 …static CBioSource::EGenome GetGenomeByOrganelle (const string& organelle, NStr::ECase use_case = N…

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