Searched refs:orlgth1 (Results 1 – 9 of 9) sorted by relevance
/dports/biology/mafft/mafft-7.267-without-extensions/core/ |
H A D | Galign11.c | 223 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11() 225 orlgth1 = 0; in G__align11() 247 orlgth1 = 0; in G__align11() 315 if( orlgth1 == 0 ) in G__align11() 327 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11() 375 orlgth1 = ll1 - 100; in G__align11() 395 ll1 = MAX( orlgth1, commonAlloc1 ); in G__align11() 719 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11_noalign() 721 orlgth1 = 0; in G__align11_noalign() 759 if( orlgth1 > 0 && orlgth2 > 0 ) in G__align11_noalign() [all …]
|
H A D | Lalign11.c | 237 static TLS int orlgth1 = 0, orlgth2 = 0; in L__align11() local 269 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11() 271 orlgth1 = 0; in L__align11() 292 if( orlgth1 == 0 ) in L__align11() 328 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11() 374 orlgth1 = ll1 - 100; in L__align11() 395 ll1 = MAX( orlgth1, commonAlloc1 ); in L__align11() 791 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11_noalign() 793 orlgth1 = 0; in L__align11_noalign() 828 if( orlgth1 > 0 && orlgth2 > 0 ) in L__align11_noalign() [all …]
|
H A D | genalign11.c | 148 static TLS int orlgth1 = 0, orlgth2 = 0; in genL__align11() local 166 if( orlgth1 > 0 && orlgth2 > 0 ) in genL__align11() 168 orlgth1 = 0; in genL__align11() 200 if( orlgth1 == 0 ) in genL__align11() 210 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in genL__align11() 214 if( orlgth1 > 0 && orlgth2 > 0 ) in genL__align11() 237 ll1 = MAX( (int)(1.3*lgth1), orlgth1 ) + 100; in genL__align11() 270 orlgth1 = ll1 - 100; in genL__align11() 281 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in genL__align11() 291 ll1 = MAX( orlgth1, commonAlloc1 ); in genL__align11()
|
H A D | SAalignmm.c | 184 static TLS int orlgth1 = 0, orlgth2 = 0; in Aalign() local 190 if( orlgth1 == 0 ) in Aalign() 199 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in Aalign() 203 if( orlgth1 > 0 && orlgth2 > 0 ) in Aalign() 223 ll1 = MAX( (int)(1.1*lgth1), orlgth1 ) + 100; in Aalign() 248 orlgth1 = ll1; in Aalign() 256 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in Aalign() 265 ll1 = MAX( orlgth1, commonAlloc1 ); in Aalign()
|
H A D | MSalign11.c | 323 static int orlgth1 = 0, orlgth2 = 0; in MSalign11() local 325 if( orlgth1 == 0 ) in MSalign11() 335 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in MSalign11() 339 if( orlgth1 > 0 && orlgth2 > 0 ) in MSalign11() 362 ll1 = MAX( (int)(1.3*lgth1), orlgth1 ) + 100; in MSalign11() 394 orlgth1 = ll1 - 100; in MSalign11() 403 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in MSalign11() 413 ll1 = MAX( orlgth1, commonAlloc1 ); in MSalign11()
|
H A D | suboptalign11.c | 164 static int orlgth1 = 0, orlgth2 = 0; in suboptalign11() local 200 if( orlgth1 == 0 ) in suboptalign11() 210 if( lgth1 > orlgth1 || lgth2 > orlgth2 ) in suboptalign11() 215 if( orlgth1 > 0 && orlgth2 > 0 ) in suboptalign11() 240 ll1 = MAX( (int)(1.3*lgth1), orlgth1 ) + 100; in suboptalign11() 272 orlgth1 = ll1 - 100; in suboptalign11() 281 if( orlgth1 > commonAlloc1 || orlgth2 > commonAlloc2 ) in suboptalign11() 292 ll1 = MAX( orlgth1, commonAlloc1 ); in suboptalign11()
|
H A D | partSalignmm.c | 1028 if( orlgth1 ) in partA__align() 1031 orlgth1 = 0; in partA__align() 1141 if( orlgth1 == 0 ) in partA__align() 1154 if( orlgth1 > 0 && orlgth2 > 0 ) in partA__align() 1225 orlgth1 = ll1 - 100; in partA__align() 1243 ll1 = MAX( orlgth1, commonAlloc1 ); in partA__align() 1717 if( orlgth1 ) in partA__align_variousdist() 1720 orlgth1 = 0; in partA__align_variousdist() 1853 if( orlgth1 == 0 ) in partA__align_variousdist() 1866 if( orlgth1 > 0 && orlgth2 > 0 ) in partA__align_variousdist() [all …]
|
H A D | Salignmm.c | 1090 if( orlgth1 ) in A__align() 1093 orlgth1 = 0; in A__align() 1209 if( orlgth1 == 0 ) in A__align() 1222 if( orlgth1 > 0 && orlgth2 > 0 ) in A__align() 1293 orlgth1 = ll1 - 100; in A__align() 1319 ll1 = MAX( orlgth1, commonAlloc1 ); in A__align() 1855 if( orlgth1 ) in A__align_variousdist() 1858 orlgth1 = 0; in A__align_variousdist() 2001 if( orlgth1 == 0 ) in A__align_variousdist() 2014 if( orlgth1 > 0 && orlgth2 > 0 ) in A__align_variousdist() [all …]
|
H A D | Dalignmm.c | 2800 if( orlgth1 ) in D__align() 2803 orlgth1 = 0; in D__align() 2935 if( orlgth1 == 0 ) in D__align() 2946 if( orlgth1 > 0 && orlgth2 > 0 ) in D__align() 3021 orlgth1 = ll1 - 100; in D__align() 3229 ll1 = MAX( orlgth1, commonAlloc1 ); in D__align() 4638 if( orlgth1 ) in D__align_variousdist() 4641 orlgth1 = 0; in D__align_variousdist() 4805 if( orlgth1 == 0 ) in D__align_variousdist() 4816 if( orlgth1 > 0 && orlgth2 > 0 ) in D__align_variousdist() [all …]
|