Searched refs:outside_penalty (Results 1 – 8 of 8) sorted by relevance
58 && PR_DEFAULT_OUTSIDE_PENALTY == (PA)->outside_penalty)342 double outside_penalty; /* Multiply this value times the number of NTs member644 && PR_DEFAULT_OUTSIDE_PENALTY == pa->outside_penalty)
277 a->outside_penalty = PR_DEFAULT_OUTSIDE_PENALTY;
1761 h->position_penalty *= pa->outside_penalty;
73 && PR_DEFAULT_OUTSIDE_PENALTY == pa->outside_penalty)413 double outside_penalty; /* Multiply this value times the number of NTs member1133 void p3_set_gs_outside_penalty(p3_global_settings * p , double outside_penalty);
95 && PR_DEFAULT_OUTSIDE_PENALTY == (PA)->outside_penalty)676 a->outside_penalty = PR_DEFAULT_OUTSIDE_PENALTY; in pr_set_default_global_args_1()4315 h->position_penalty *= pa->outside_penalty; in compute_position_penalty()7763 p->outside_penalty = val ; in p3_set_gs_primer_outside_penalty()8072 p3_set_gs_outside_penalty(p3_global_settings * p , double outside_penalty){ in p3_set_gs_outside_penalty() argument8073 p->outside_penalty = outside_penalty; in p3_set_gs_outside_penalty()8637 printf(" outside_penalty %f\n", p->outside_penalty) ; in p3_print_args()
478 COMPARE_FLOAT("PRIMER_OUTSIDE_PENALTY", pa->outside_penalty); in read_boulder_record()
302 || PR_DEFAULT_OUTSIDE_PENALTY != pa->outside_penalty) in print_oligo()
468 doubleProperties.insert("PRIMER_OUTSIDE_PENALTY", &primerArgs.outside_penalty); in initMaps()