| /dports/databases/tiledb/TileDB-2.5.2/tiledb/sm/query/ |
| H A D | read_cell_slab_iter.cc | 175 unsigned* overlap_type) { in compute_cell_slab_overlap() argument
188 *overlap_type = 0; in compute_cell_slab_overlap()
193 *overlap_type = 0; in compute_cell_slab_overlap()
206 *overlap_type = (*overlap_length == cell_slab.length_) ? 1 : 2; in compute_cell_slab_overlap()
291 unsigned overlap_type; // 0: no overlap, 1: full overlap, 2: partial overlap in compute_result_cell_slabs_dense() local
302 *pit, fd.second, &slab_overlap, &overlap_length, &overlap_type); in compute_result_cell_slabs_dense()
305 if (overlap_type == 0) { in compute_result_cell_slabs_dense()
319 if (overlap_type == 2) { in compute_result_cell_slabs_dense()
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| H A D | read_cell_slab_iter.h | 237 unsigned* overlap_type);
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| /dports/print/fontforge/fontforge-20201107/fontforge/ |
| H A D | splineoverlap.h | 10 extern Monotonic *SSsToMContours(SplineSet *spl, enum overlap_type ot);
11 extern SplineSet *SplineSetRemoveOverlap(SplineChar *sc, SplineSet *base, enum overlap_type ot);
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| H A D | edgelist.h | 132 enum overlap_type ot;
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| /dports/biology/plink/plink-ng-79b2df8c/1.9/ |
| H A D | plink_cnv.c | 378 uint32_t is_cnv_overlap_one_size(uint32_t start_pos, uint32_t end_pos, uint32_t overlap_type, doubl… in is_cnv_overlap_one_size() argument
414 if (!overlap_type) { in is_cnv_overlap_one_size()
416 } else if (overlap_type == CNV_DISRUPT) { in is_cnv_overlap_one_size()
436 if (overlap_type == CNV_OVERLAP_REGION) { in is_cnv_overlap_one_size()
438 } else if (overlap_type == CNV_OVERLAP_UNION) { in is_cnv_overlap_one_size()
451 uint32_t is_cnv_overlap(uint32_t start_pos, uint32_t end_pos, uint32_t overlap_type, double overlap… in is_cnv_overlap() argument
452 …if (is_cnv_overlap_one_size(start_pos, end_pos, overlap_type, overlap_val, small_max_width, il_sma… in is_cnv_overlap()
455 …return is_cnv_overlap_one_size(start_pos, end_pos, overlap_type, overlap_val, large_max_width, il_… in is_cnv_overlap()
477 …l_small, uint64_t* il_large, uint32_t intersect_filter_type, uint32_t overlap_type, double overlap… in cnv_make_map() argument
615 …if (is_cnv_overlap((uint32_t)((uint64_t)llii), (uint32_t)ullii, overlap_type, overlap_val, il_chro… in cnv_make_map()
[all …]
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| H A D | plink_cnv.h | 21 …lter_type, char* intersect_filter_fname, char* subset_fname, uint32_t overlap_type, double overlap…
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/validator/ |
| H A D | feature_match.cpp | 95 sequence::EOverlapType overlap_type = sequence::eOverlap_CheckIntRev; in s_SetUpXrefPairs() local
99 overlap_type = sequence::eOverlap_SubsetRev; in s_SetUpXrefPairs()
117 … if (TestForOverlapEx(cds.GetLocation(), mrna.GetLocation(), overlap_type, scope) >= 0) { in s_SetUpXrefPairs()
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| /dports/misc/elki/elki-release0.7.1-1166-gfb1fffdf3/addons/xtree/src/main/java/de/lmu/ifi/dbs/elki/index/tree/spatial/rstarvariants/xtree/ |
| H A D | XTreeSettings.java | 74 protected Overlap overlap_type = Overlap.DATA_OVERLAP; field in XTreeSettings
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| H A D | AbstractXTreeFactory.java | 128 settings.overlap_type = OVERLAP_TYPE_PARAMETER.getValue(); in makeOptions()
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| /dports/biology/wise/wise2.4.1/src/models/ |
| H A D | transfactor.dy | 55 int overlap_type !def="TFCOMPARA_OVERLAP_PRECISE"
189 out->overlap_type = TFCOMPARA_OVERLAP_PRECISE;
191 out->overlap_type = TFCOMPARA_OVERLAP_OVERLAP;
193 out->overlap_type = TFCOMPARA_OVERLAP_REGION;
232 if( para->overlap_type == TFCOMPARA_OVERLAP_PRECISE ) {
237 } else if ( para->overlap_type == TFCOMPARA_OVERLAP_OVERLAP ) {
243 } else if ( para->overlap_type == TFCOMPARA_OVERLAP_REGION ) {
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| H A D | transfactor.c | 124 out->overlap_type = TFCOMPARA_OVERLAP_PRECISE; in new_TransFactorComparaPara_from_argv()
126 out->overlap_type = TFCOMPARA_OVERLAP_OVERLAP; in new_TransFactorComparaPara_from_argv()
128 out->overlap_type = TFCOMPARA_OVERLAP_REGION; in new_TransFactorComparaPara_from_argv()
168 if( para->overlap_type == TFCOMPARA_OVERLAP_PRECISE ) { in calculate_TransFactorMatchSetCompara()
173 } else if ( para->overlap_type == TFCOMPARA_OVERLAP_OVERLAP ) { in calculate_TransFactorMatchSetCompara()
179 } else if ( para->overlap_type == TFCOMPARA_OVERLAP_REGION ) { in calculate_TransFactorMatchSetCompara()
2041 out->overlap_type = TFCOMPARA_OVERLAP_PRECISE; in TransFactorComparaPara_alloc()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/util/ |
| H A D | sequence.hpp | 410 EOverlapType overlap_type,
421 EOverlapType overlap_type,
429 EOverlapType overlap_type,
524 sequence::EOverlapType overlap_type,
533 sequence::EOverlapType overlap_type,
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/util/ |
| H A D | sequence.hpp | 410 EOverlapType overlap_type,
421 EOverlapType overlap_type,
429 EOverlapType overlap_type,
524 sequence::EOverlapType overlap_type,
533 sequence::EOverlapType overlap_type,
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | feature.cpp | 1447 overlap_type = eOverlap_CheckIntervals; in sx_GetOverlapType()
1453 overlap_type = eOverlap_Subset; in sx_GetOverlapType()
1455 return overlap_type; in sx_GetOverlapType()
1565 EOverlapType overlap_type = in sx_GetParentByOverlap() local
2585 EOverlapType overlap_type = in s_CollectBestOverlaps() local
3493 switch (overlap_type) { in GetOverlappingFeatures()
3581 overlap_type, in GetOverlappingFeatures()
3586 overlap_type, in GetOverlappingFeatures()
3604 overlap_type, in GetOverlappingFeatures()
3609 overlap_type, in GetOverlappingFeatures()
[all …]
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| H A D | sequence.cpp | 837 EOverlapType overlap_type, in GetOverlappingFeatures() argument
845 switch (overlap_type) { in GetOverlappingFeatures()
1008 EOverlapType overlap_type_this_iteration = overlap_type; in GetOverlappingFeatures()
1073 if (overlap_type == eOverlap_Contained) { in GetOverlappingFeatures()
1099 EOverlapType overlap_type, in GetBestOverlappingFeat() argument
1129 overlap_type, scores, scope, opts, plugin ); in GetBestOverlappingFeat()
1510 EOverlapType overlap_type = eOverlap_CheckIntRev; in GetBestMrnaForCds() local
1514 overlap_type = eOverlap_SubsetRev; in GetBestMrnaForCds()
1519 overlap_type, in GetBestMrnaForCds()
2238 sequence::EOverlapType overlap_type, in GetBestOverlappingFeat() argument
[all …]
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | feature.cpp | 1447 overlap_type = eOverlap_CheckIntervals; in sx_GetOverlapType()
1453 overlap_type = eOverlap_Subset; in sx_GetOverlapType()
1455 return overlap_type; in sx_GetOverlapType()
1565 EOverlapType overlap_type = in sx_GetParentByOverlap() local
2585 EOverlapType overlap_type = in s_CollectBestOverlaps() local
3493 switch (overlap_type) { in GetOverlappingFeatures()
3581 overlap_type, in GetOverlappingFeatures()
3586 overlap_type, in GetOverlappingFeatures()
3604 overlap_type, in GetOverlappingFeatures()
3609 overlap_type, in GetOverlappingFeatures()
[all …]
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| H A D | sequence.cpp | 837 EOverlapType overlap_type, in GetOverlappingFeatures() argument
845 switch (overlap_type) { in GetOverlappingFeatures()
1008 EOverlapType overlap_type_this_iteration = overlap_type; in GetOverlappingFeatures()
1073 if (overlap_type == eOverlap_Contained) { in GetOverlappingFeatures()
1099 EOverlapType overlap_type, in GetBestOverlappingFeat() argument
1129 overlap_type, scores, scope, opts, plugin ); in GetBestOverlappingFeat()
1510 EOverlapType overlap_type = eOverlap_CheckIntRev; in GetBestMrnaForCds() local
1514 overlap_type = eOverlap_SubsetRev; in GetBestMrnaForCds()
1519 overlap_type, in GetBestMrnaForCds()
2238 sequence::EOverlapType overlap_type, in GetBestOverlappingFeat() argument
[all …]
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/ |
| H A D | annot_selector.hpp | 207 SAnnotSelector& SetOverlapType(EOverlapType overlap_type) in SetOverlapType()
209 m_OverlapType = overlap_type; in SetOverlapType()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/ |
| H A D | annot_selector.hpp | 207 SAnnotSelector& SetOverlapType(EOverlapType overlap_type) in SetOverlapType()
209 m_OverlapType = overlap_type; in SetOverlapType()
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| /dports/devel/tex-web2c/texlive-20150521-source/texk/web2c/luatexdir/luafontloader/fontforge/fontforge/ |
| H A D | edgelist.h | 136 enum overlap_type ot;
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| /dports/devel/tex-synctex/texlive-20150521-source/texk/web2c/luatexdir/luafontloader/fontforge/fontforge/ |
| H A D | edgelist.h | 136 enum overlap_type ot;
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| /dports/japanese/tex-ptex/texlive-20150521-source/texk/web2c/luatexdir/luafontloader/fontforge/fontforge/ |
| H A D | edgelist.h | 136 enum overlap_type ot;
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| /dports/print/tex-basic-engines/texlive-20150521-source/texk/web2c/luatexdir/luafontloader/fontforge/fontforge/ |
| H A D | edgelist.h | 136 enum overlap_type ot;
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| /dports/print/tex-aleph/texlive-20150521-source/texk/web2c/luatexdir/luafontloader/fontforge/fontforge/ |
| H A D | edgelist.h | 136 enum overlap_type ot;
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| /dports/print/tex-luatex/texlive-20150521-source/texk/web2c/luatexdir/luafontloader/fontforge/fontforge/ |
| H A D | edgelist.h | 136 enum overlap_type ot;
|