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Searched refs:ovlid (Results 1 – 3 of 3) sorted by relevance

/dports/biology/canu/canu-2.2/src/overlapAlign/
H A DcomputeOverlapAlignment.C777 _alignsA[ovlid][ii] = '-'; in computeOverlapAlignment()
778 _alignsB[ovlid][ii] = '-'; in computeOverlapAlignment()
781 _alignsA[ovlid][alen] = 0; in computeOverlapAlignment()
782 _alignsB[ovlid][alen] = 0; in computeOverlapAlignment()
813 _alignsA[ovlid][pp] = _aRead[aa]; in computeOverlapAlignment()
814 _alignsB[ovlid][pp] = '-'; in computeOverlapAlignment()
820 _alignsA[ovlid][pp] = aaln[ii]; in computeOverlapAlignment()
821 _alignsB[ovlid][pp] = baln[ii]; in computeOverlapAlignment()
829 _alignsB[ovlid][pp] = '-'; in computeOverlapAlignment()
839 _alignsA[ovlid][alen] = 0; in computeOverlapAlignment()
[all …]
H A DcomputeAlignments.C507 for (uint32 ovlid=0; ovlid<_overlapsLen; ovlid++) { in computeAlignments() local
508 ovOverlap *ov = _overlaps + ovlid; in computeAlignments()
515 …mputeAlignments()-- ----------------------------------------OVERLAP %u/%u\n", ovlid, _overlapsLen); in computeAlignments()
540 …omputeAlignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d short.\n", ovlid, _aID, abgn, aend,… in computeAlignments()
555 …teAlignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d contained.\n", ovlid, _aID, abgn, aend,… in computeAlignments()
569 …ignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d thick3 %d < %d\n", ovlid, _aID, abgn, aend,… in computeAlignments()
583 …ignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d thick5 %d < %d\n", ovlid, _aID, abgn, aend,… in computeAlignments()
599 computeOverlapAlignment(ovlid, in computeAlignments()
H A DoverlapAlign-computation.H106 void computeOverlapAlignment(uint32 ovlid,