Searched refs:ovlid (Results 1 – 3 of 3) sorted by relevance
/dports/biology/canu/canu-2.2/src/overlapAlign/ |
H A D | computeOverlapAlignment.C | 777 _alignsA[ovlid][ii] = '-'; in computeOverlapAlignment() 778 _alignsB[ovlid][ii] = '-'; in computeOverlapAlignment() 781 _alignsA[ovlid][alen] = 0; in computeOverlapAlignment() 782 _alignsB[ovlid][alen] = 0; in computeOverlapAlignment() 813 _alignsA[ovlid][pp] = _aRead[aa]; in computeOverlapAlignment() 814 _alignsB[ovlid][pp] = '-'; in computeOverlapAlignment() 820 _alignsA[ovlid][pp] = aaln[ii]; in computeOverlapAlignment() 821 _alignsB[ovlid][pp] = baln[ii]; in computeOverlapAlignment() 829 _alignsB[ovlid][pp] = '-'; in computeOverlapAlignment() 839 _alignsA[ovlid][alen] = 0; in computeOverlapAlignment() [all …]
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H A D | computeAlignments.C | 507 for (uint32 ovlid=0; ovlid<_overlapsLen; ovlid++) { in computeAlignments() local 508 ovOverlap *ov = _overlaps + ovlid; in computeAlignments() 515 …mputeAlignments()-- ----------------------------------------OVERLAP %u/%u\n", ovlid, _overlapsLen); in computeAlignments() 540 …omputeAlignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d short.\n", ovlid, _aID, abgn, aend,… in computeAlignments() 555 …teAlignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d contained.\n", ovlid, _aID, abgn, aend,… in computeAlignments() 569 …ignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d thick3 %d < %d\n", ovlid, _aID, abgn, aend,… in computeAlignments() 583 …ignments()-- overlap %4u a=%8u %6d-%-6d b=%8u %6d-%-6d thick5 %d < %d\n", ovlid, _aID, abgn, aend,… in computeAlignments() 599 computeOverlapAlignment(ovlid, in computeAlignments()
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H A D | overlapAlign-computation.H | 106 void computeOverlapAlignment(uint32 ovlid,
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