/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | p7_hmm.c | 166 if (hmm->flags & p7H_CONS) ESL_ALLOC(hmm->consensus, (M+2) * sizeof(char)); in p7_hmm_CreateBody() 274 …if ((hmm->flags & p7H_CONS) && (status = esl_strdup(hmm->consensus, -1, &(new->consensus))) != es… in p7_hmm_Clone() 724 hmm->flags |= p7H_CONS; in p7_hmm_SetConsensus() 730 hmm->flags &= (~p7H_CONS); in p7_hmm_SetConsensus() 1212 if ((h1->flags & p7H_CONS) && esl_strcmp(h1->consensus, h2->consensus) != 0) return eslFAIL; in p7_hmm_Compare() 1288 …if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL… in p7_hmm_Validate()
|
H A D | p7_hmmfile.c | 587 …if (format >= p7_HMMFILE_3e && fprintf(fp, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no") … in p7_hmmfile_WriteASCII() 653 …if (fprintf(fp, " %c", (hmm->flags & p7H_CONS) ? x : '-') < 0) ESL_EXCEPTION_SYS(eslEWRITE, "hmm… in p7_hmmfile_WriteASCII() 831 …if((offset = sprintf(ret_hmm+coffset, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no")) < 0)… in p7_hmmfile_WriteToString() 971 …if ((offset = sprintf(ret_hmm + coffset, " %c", (hmm->flags & p7H_CONS) ? hmm->consensus[k] : '-… in p7_hmmfile_WriteToString() 1087 …if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm… in p7_hmmfile_WriteBinary() 1395 hmm->flags |= p7H_CONS; in read_asc30hmm() 1571 if (hmm->flags & p7H_CONS) hmm->consensus[k] = *tok1; in read_asc30hmm() 1609 if (hmm->flags & p7H_CONS) { hmm->consensus[0] = ' '; hmm->consensus[hmm->M+1] = '\0'; } in read_asc30hmm() 1705 …if ((hmm->flags & p7H_CONS) && ! fread((char *) hmm->consensus, sizeof(char), hmm->M+2, hfp->f)) … in read_bin30hmm()
|
H A D | modelconfig.c | 60 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_ProfileConfig() 79 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_ProfileConfig()
|
H A D | generic_fwdback_rescaled.c | 291 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_profile_CopyInfoFromHMM() 310 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_profile_CopyInfoFromHMM()
|
H A D | mpisupport.c | 147 …if (hmm->flags & p7H_CONS) { if (MPI_Pack_size(M+2, MPI_CHAR, comm, &sz) != 0) ESL_XEXCEPTION(es… in p7_hmm_MPIPackSize() 208 …if (hmm->flags & p7H_CONS) { if (MPI_Pack(hmm->consensus, M+2, MPI_CHAR, buf, n, pos, comm… in p7_hmm_MPIPack() 298 …if (hmm->flags & p7H_CONS) { if (MPI_Unpack(buf, n, pos, hmm->consensus, M+2, MPI… in p7_hmm_MPIUnpack()
|
H A D | hmmdmstr.c | 1247 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop() 1305 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
|
H A D | hmmdmstr_shard.c | 1286 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop() 1344 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
|
H A D | hmmdwrkr.c | 433 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
|
H A D | hmmdwrkr_shard.c | 460 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
|
H A D | hmmer.h | 124 #define p7H_CONS (1<<16) /* consensus residue line available */ macro
|
/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | p7_hmm.c | 166 if (hmm->flags & p7H_CONS) ESL_ALLOC(hmm->consensus, (M+2) * sizeof(char)); in p7_hmm_CreateBody() 274 …if ((hmm->flags & p7H_CONS) && (status = esl_strdup(hmm->consensus, -1, &(new->consensus))) != es… in p7_hmm_Clone() 724 hmm->flags |= p7H_CONS; in p7_hmm_SetConsensus() 730 hmm->flags &= (~p7H_CONS); in p7_hmm_SetConsensus() 1212 if ((h1->flags & p7H_CONS) && esl_strcmp(h1->consensus, h2->consensus) != 0) return eslFAIL; in p7_hmm_Compare() 1288 …if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL… in p7_hmm_Validate()
|
H A D | p7_hmmfile.c | 587 …if (format >= p7_HMMFILE_3e && fprintf(fp, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no") … in p7_hmmfile_WriteASCII() 653 …if (fprintf(fp, " %c", (hmm->flags & p7H_CONS) ? x : '-') < 0) ESL_EXCEPTION_SYS(eslEWRITE, "hmm… in p7_hmmfile_WriteASCII() 831 …if((offset = sprintf(ret_hmm+coffset, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no")) < 0)… in p7_hmmfile_WriteToString() 971 …if ((offset = sprintf(ret_hmm + coffset, " %c", (hmm->flags & p7H_CONS) ? hmm->consensus[k] : '-… in p7_hmmfile_WriteToString() 1087 …if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm… in p7_hmmfile_WriteBinary() 1395 hmm->flags |= p7H_CONS; in read_asc30hmm() 1571 if (hmm->flags & p7H_CONS) hmm->consensus[k] = *tok1; in read_asc30hmm() 1609 if (hmm->flags & p7H_CONS) { hmm->consensus[0] = ' '; hmm->consensus[hmm->M+1] = '\0'; } in read_asc30hmm() 1705 …if ((hmm->flags & p7H_CONS) && ! fread((char *) hmm->consensus, sizeof(char), hmm->M+2, hfp->f)) … in read_bin30hmm()
|
H A D | modelconfig.c | 60 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_ProfileConfig() 79 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_ProfileConfig()
|
H A D | generic_fwdback_rescaled.c | 291 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_profile_CopyInfoFromHMM() 310 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_profile_CopyInfoFromHMM()
|
H A D | mpisupport.c | 147 …if (hmm->flags & p7H_CONS) { if (MPI_Pack_size(M+2, MPI_CHAR, comm, &sz) != 0) ESL_XEXCEPTION(es… in p7_hmm_MPIPackSize() 208 …if (hmm->flags & p7H_CONS) { if (MPI_Pack(hmm->consensus, M+2, MPI_CHAR, buf, n, pos, comm… in p7_hmm_MPIPack() 298 …if (hmm->flags & p7H_CONS) { if (MPI_Unpack(buf, n, pos, hmm->consensus, M+2, MPI… in p7_hmm_MPIUnpack()
|
H A D | hmmdmstr.c | 1247 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop() 1305 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
|
H A D | hmmdmstr_shard.c | 1286 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop() 1344 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
|
H A D | hmmdwrkr.c | 433 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
|
H A D | hmmdwrkr_shard.c | 460 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
|
H A D | hmmer.h | 124 #define p7H_CONS (1<<16) /* consensus residue line available */ macro
|
/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | cm_p7_modelmaker.c | 575 hmm->flags |= p7H_CONS; in cm_p7_hmm_SetConsensus() 581 hmm->flags &= (~p7H_CONS); in cm_p7_hmm_SetConsensus()
|
H A D | cm_file.c | 2896 hmm->flags |= p7H_CONS; in read_asc30hmm() 3072 if (hmm->flags & p7H_CONS) hmm->consensus[k] = *tok1; in read_asc30hmm() 3110 if (hmm->flags & p7H_CONS) { hmm->consensus[0] = ' '; hmm->consensus[hmm->M+1] = '\0'; } in read_asc30hmm() 3206 …if ((hmm->flags & p7H_CONS) && ! fread((char *) hmm->consensus, sizeof(char), hmm->M+2, hfp->f)) … in read_bin30hmm()
|