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Searched refs:p7H_CONS (Results 1 – 22 of 22) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dp7_hmm.c166 if (hmm->flags & p7H_CONS) ESL_ALLOC(hmm->consensus, (M+2) * sizeof(char)); in p7_hmm_CreateBody()
274 …if ((hmm->flags & p7H_CONS) && (status = esl_strdup(hmm->consensus, -1, &(new->consensus))) != es… in p7_hmm_Clone()
724 hmm->flags |= p7H_CONS; in p7_hmm_SetConsensus()
730 hmm->flags &= (~p7H_CONS); in p7_hmm_SetConsensus()
1212 if ((h1->flags & p7H_CONS) && esl_strcmp(h1->consensus, h2->consensus) != 0) return eslFAIL; in p7_hmm_Compare()
1288 …if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL… in p7_hmm_Validate()
H A Dp7_hmmfile.c587 …if (format >= p7_HMMFILE_3e && fprintf(fp, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no") … in p7_hmmfile_WriteASCII()
653 …if (fprintf(fp, " %c", (hmm->flags & p7H_CONS) ? x : '-') < 0) ESL_EXCEPTION_SYS(eslEWRITE, "hmm… in p7_hmmfile_WriteASCII()
831 …if((offset = sprintf(ret_hmm+coffset, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no")) < 0)… in p7_hmmfile_WriteToString()
971 …if ((offset = sprintf(ret_hmm + coffset, " %c", (hmm->flags & p7H_CONS) ? hmm->consensus[k] : '-… in p7_hmmfile_WriteToString()
1087 …if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm… in p7_hmmfile_WriteBinary()
1395 hmm->flags |= p7H_CONS; in read_asc30hmm()
1571 if (hmm->flags & p7H_CONS) hmm->consensus[k] = *tok1; in read_asc30hmm()
1609 if (hmm->flags & p7H_CONS) { hmm->consensus[0] = ' '; hmm->consensus[hmm->M+1] = '\0'; } in read_asc30hmm()
1705 …if ((hmm->flags & p7H_CONS) && ! fread((char *) hmm->consensus, sizeof(char), hmm->M+2, hfp->f)) … in read_bin30hmm()
H A Dmodelconfig.c60 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_ProfileConfig()
79 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_ProfileConfig()
H A Dgeneric_fwdback_rescaled.c291 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_profile_CopyInfoFromHMM()
310 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_profile_CopyInfoFromHMM()
H A Dmpisupport.c147 …if (hmm->flags & p7H_CONS) { if (MPI_Pack_size(M+2, MPI_CHAR, comm, &sz) != 0) ESL_XEXCEPTION(es… in p7_hmm_MPIPackSize()
208 …if (hmm->flags & p7H_CONS) { if (MPI_Pack(hmm->consensus, M+2, MPI_CHAR, buf, n, pos, comm… in p7_hmm_MPIPack()
298 …if (hmm->flags & p7H_CONS) { if (MPI_Unpack(buf, n, pos, hmm->consensus, M+2, MPI… in p7_hmm_MPIUnpack()
H A Dhmmdmstr.c1247 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop()
1305 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
H A Dhmmdmstr_shard.c1286 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop()
1344 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
H A Dhmmdwrkr.c433 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
H A Dhmmdwrkr_shard.c460 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
H A Dhmmer.h124 #define p7H_CONS (1<<16) /* consensus residue line available */ macro
/dports/biology/hmmer/hmmer-3.3/src/
H A Dp7_hmm.c166 if (hmm->flags & p7H_CONS) ESL_ALLOC(hmm->consensus, (M+2) * sizeof(char)); in p7_hmm_CreateBody()
274 …if ((hmm->flags & p7H_CONS) && (status = esl_strdup(hmm->consensus, -1, &(new->consensus))) != es… in p7_hmm_Clone()
724 hmm->flags |= p7H_CONS; in p7_hmm_SetConsensus()
730 hmm->flags &= (~p7H_CONS); in p7_hmm_SetConsensus()
1212 if ((h1->flags & p7H_CONS) && esl_strcmp(h1->consensus, h2->consensus) != 0) return eslFAIL; in p7_hmm_Compare()
1288 …if (hmm->flags & p7H_CONS) { if (hmm->consensus == NULL || strlen(hmm->consensus) != hmm->M+1) ESL… in p7_hmm_Validate()
H A Dp7_hmmfile.c587 …if (format >= p7_HMMFILE_3e && fprintf(fp, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no") … in p7_hmmfile_WriteASCII()
653 …if (fprintf(fp, " %c", (hmm->flags & p7H_CONS) ? x : '-') < 0) ESL_EXCEPTION_SYS(eslEWRITE, "hmm… in p7_hmmfile_WriteASCII()
831 …if((offset = sprintf(ret_hmm+coffset, "CONS %s\n", (hmm->flags & p7H_CONS) ? "yes" : "no")) < 0)… in p7_hmmfile_WriteToString()
971 …if ((offset = sprintf(ret_hmm + coffset, " %c", (hmm->flags & p7H_CONS) ? hmm->consensus[k] : '-… in p7_hmmfile_WriteToString()
1087 …if ((hmm->flags & p7H_CONS) && (fwrite((char *) hmm->consensus, sizeof(char), hmm->M+2, fp) != hmm… in p7_hmmfile_WriteBinary()
1395 hmm->flags |= p7H_CONS; in read_asc30hmm()
1571 if (hmm->flags & p7H_CONS) hmm->consensus[k] = *tok1; in read_asc30hmm()
1609 if (hmm->flags & p7H_CONS) { hmm->consensus[0] = ' '; hmm->consensus[hmm->M+1] = '\0'; } in read_asc30hmm()
1705 …if ((hmm->flags & p7H_CONS) && ! fread((char *) hmm->consensus, sizeof(char), hmm->M+2, hfp->f)) … in read_bin30hmm()
H A Dmodelconfig.c60 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_ProfileConfig()
79 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_ProfileConfig()
H A Dgeneric_fwdback_rescaled.c291 …if (! (hmm->flags & p7H_CONS)) ESL_XEXCEPTION(eslEINVAL, "HMM must have a consensus to trans… in p7_profile_CopyInfoFromHMM()
310 …if (hmm->flags & p7H_CONS) strcpy(gm->consensus, hmm->consensus); /* must be present, actually, s… in p7_profile_CopyInfoFromHMM()
H A Dmpisupport.c147 …if (hmm->flags & p7H_CONS) { if (MPI_Pack_size(M+2, MPI_CHAR, comm, &sz) != 0) ESL_XEXCEPTION(es… in p7_hmm_MPIPackSize()
208 …if (hmm->flags & p7H_CONS) { if (MPI_Pack(hmm->consensus, M+2, MPI_CHAR, buf, n, pos, comm… in p7_hmm_MPIPack()
298 …if (hmm->flags & p7H_CONS) { if (MPI_Unpack(buf, n, pos, hmm->consensus, M+2, MPI… in p7_hmm_MPIUnpack()
H A Dhmmdmstr.c1247 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop()
1305 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
H A Dhmmdmstr_shard.c1286 if (hmm->flags & p7H_CONS) n = n + hmm->M + 2; in clientside_loop()
1344 if (hmm->flags & p7H_CONS) { memcpy(ptr, hmm->consensus, n); ptr += n; } in clientside_loop()
H A Dhmmdwrkr.c433 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
H A Dhmmdwrkr_shard.c460 if (hmm->flags & p7H_CONS) { memcpy(hmm->consensus, p, n); p += n; } in process_QueryCmd()
H A Dhmmer.h124 #define p7H_CONS (1<<16) /* consensus residue line available */ macro
/dports/biology/infernal/infernal-1.1.3/src/
H A Dcm_p7_modelmaker.c575 hmm->flags |= p7H_CONS; in cm_p7_hmm_SetConsensus()
581 hmm->flags &= (~p7H_CONS); in cm_p7_hmm_SetConsensus()
H A Dcm_file.c2896 hmm->flags |= p7H_CONS; in read_asc30hmm()
3072 if (hmm->flags & p7H_CONS) hmm->consensus[k] = *tok1; in read_asc30hmm()
3110 if (hmm->flags & p7H_CONS) { hmm->consensus[0] = ' '; hmm->consensus[hmm->M+1] = '\0'; } in read_asc30hmm()
3206 …if ((hmm->flags & p7H_CONS) && ! fread((char *) hmm->consensus, sizeof(char), hmm->M+2, hfp->f)) … in read_bin30hmm()