Searched refs:p7H_II (Results 1 – 23 of 23) sorted by relevance
306 hmm->t[0][p7H_II] = zerofy(1.0 - prm->h); in create_brute_hmm()313 hmm->t[1][p7H_II] = zerofy(1.0 - prm->i); in create_brute_hmm()320 hmm->t[2][p7H_II] = zerofy(1.0 - prm->j); in create_brute_hmm()327 hmm->t[3][p7H_II] = zerofy(1.0 - prm->k); in create_brute_hmm()
128 …if (insert_expL != NULL) insert_expL[1] = 1 / (1 - hmm->t[1][p7H_II]) ; //expected length o… in hmmlogo_IndelValues()133 …if (insert_expL != NULL) insert_expL[i] = 1 / (1 - hmm->t[i][p7H_II]) ; //expected lengt… in hmmlogo_IndelValues()
435 hmm->t[i][p7H_II] = ESL_MIN(hmm->t[i][p7H_II], bld->max_insert_len*hmm->t[i][p7H_MI]); in p7_Builder()714 …I[1][col_ptr] = hmm->t[1][p7H_II] * I[1][prev_col_ptr]; // 1st insert state can emit chars indef… in p7_Builder_MaxLength()719 …I[k][col_ptr] = hmm->t[k][p7H_MI] * M[k][prev_col_ptr] + hmm->t[k][p7H_II] * I[k][prev_col_ptr… in p7_Builder_MaxLength()
71 hmm->t[k][p7H_II] = pextend; in p7_Seqmodel()
427 tp[p7P_II] = hmm->t[k][p7H_II]; in p7_profile_ConfigInOdds()527 tp[p7P_II] = hmm->t[k][p7H_II]; in p7_profile_ConfigInOdds_DDScaled()
1071 hmm->t[k][p7H_II] = 0.; in p7_hmm_SampleEnumerable()1143 hmm->t[k][p7H_II] = tii; in p7_hmm_SampleUniform()
132 tp[p7P_II] = log(hmm->t[k][p7H_II]); in p7_ProfileConfig()
1538 case p7T_I: hmm->t[k][p7H_II] += wt; break; in p7_trace_Count()
133 p7H_II = 4, enumerator
1931 hmm->t[0][p7H_II] = 0.0; in read_asc20hmm()1976 hmm->t[hmm->M][p7H_II] = 0.0; in read_asc20hmm()
372 hmm->t[k][p7H_II] = pextend; in apply_fixed_gap_params()
139 cm->mlp7->t[k][p7H_II] = cp9->t[k][CTII]; in cm_cp9_to_p7()