/dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
H A D | evalues.c | 115 hmm->evparam[p7_FTAU] = om->evparam[p7_FTAU] = tau; in p7_Calibrate() 124 gm->evparam[p7_FTAU] = tau; in p7_Calibrate()
|
H A D | p7_pipeline.c | 732 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 808 lnP = esl_exp_logsurv (seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 829 …hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 836 …hit->sum_lnP = esl_exp_logsurv (hit->sum_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 855 …hit->dcl[d].lnP = esl_exp_logsurv (hit->dcl[d].bitscore, om->evparam[p7_FTAU], om->evparam[p… in p7_Pipeline() 1080 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget() 1164 dom_lnP = esl_exp_logsurv(dom_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget() 1201 … hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
|
H A D | p7_hmmfile.c | 609 …if (fprintf(fp, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU]) < 0) ESL_EXCEPTION_SYS(e… in p7_hmmfile_WriteASCII() 613 …if (fprintf(fp, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7_FLAMB… in p7_hmmfile_WriteASCII() 762 sprintf(buff, "%f", hmm->evparam[p7_FTAU])) : in p7_hmmfile_WriteToString() 765 … sprintf(buff, "%8.4f", hmm->evparam[p7_FTAU]) + sprintf(buff, "%8.5f", hmm->evparam[p7_FLAMBDA]))) in p7_hmmfile_WriteToString() 890 …if ((offset =sprintf(ret_hmm + coffset, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU])) … in p7_hmmfile_WriteToString() 897 …tf(ret_hmm + coffset, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7… in p7_hmmfile_WriteToString() 1104 oldparam[2] = hmm->evparam[p7_FTAU]; in p7_hmmfile_WriteBinary() 1457 …else if (strcasecmp(tok2, "FORWARD") == 0) { hmm->evparam[p7_FTAU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm() 1470 …0) { hmm->evparam[p7_FTAU] = atof(tok3);… in read_asc30hmm() 1725 hmm->evparam[p7_FTAU] = hmm->evparam[2]; in read_bin30hmm()
|
H A D | hmmer.h | 71 enum p7_evparams_e { p7_MMU = 0, p7_MLAMBDA = 1, p7_VMU = 2, p7_VLAMBDA = 3, p7_FTAU = 4, … enumerator
|
/dports/biology/hmmer/hmmer-3.3/src/ |
H A D | evalues.c | 115 hmm->evparam[p7_FTAU] = om->evparam[p7_FTAU] = tau; in p7_Calibrate() 124 gm->evparam[p7_FTAU] = tau; in p7_Calibrate()
|
H A D | p7_pipeline.c | 732 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 808 lnP = esl_exp_logsurv (seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 829 …hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 836 …hit->sum_lnP = esl_exp_logsurv (hit->sum_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline() 855 …hit->dcl[d].lnP = esl_exp_logsurv (hit->dcl[d].bitscore, om->evparam[p7_FTAU], om->evparam[p… in p7_Pipeline() 1080 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget() 1164 dom_lnP = esl_exp_logsurv(dom_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget() 1201 … hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
|
H A D | p7_hmmfile.c | 609 …if (fprintf(fp, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU]) < 0) ESL_EXCEPTION_SYS(e… in p7_hmmfile_WriteASCII() 613 …if (fprintf(fp, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7_FLAMB… in p7_hmmfile_WriteASCII() 762 sprintf(buff, "%f", hmm->evparam[p7_FTAU])) : in p7_hmmfile_WriteToString() 765 … sprintf(buff, "%8.4f", hmm->evparam[p7_FTAU]) + sprintf(buff, "%8.5f", hmm->evparam[p7_FLAMBDA]))) in p7_hmmfile_WriteToString() 890 …if ((offset =sprintf(ret_hmm + coffset, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU])) … in p7_hmmfile_WriteToString() 897 …tf(ret_hmm + coffset, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7… in p7_hmmfile_WriteToString() 1104 oldparam[2] = hmm->evparam[p7_FTAU]; in p7_hmmfile_WriteBinary() 1457 …else if (strcasecmp(tok2, "FORWARD") == 0) { hmm->evparam[p7_FTAU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm() 1470 …0) { hmm->evparam[p7_FTAU] = atof(tok3);… in read_asc30hmm() 1725 hmm->evparam[p7_FTAU] = hmm->evparam[2]; in read_bin30hmm()
|
H A D | hmmer.h | 71 enum p7_evparams_e { p7_MMU = 0, p7_MLAMBDA = 1, p7_VMU = 2, p7_VLAMBDA = 3, p7_FTAU = 4, … enumerator
|
/dports/biology/infernal/infernal-1.1.3/src/ |
H A D | cm_p7_modelmaker.c | 290 hmm->evparam[p7_FTAU] = lftau; in cm_p7_Calibrate() 443 cm->fp7_evparam[CM_p7_LFTAU] = hmm->evparam[p7_FTAU]; in cm_SetFilterHMM()
|
H A D | cm_file.c | 2958 …else if (strcasecmp(tok2, "FORWARD") == 0) { hmm->evparam[p7_FTAU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm() 2971 …0) { hmm->evparam[p7_FTAU] = atof(tok3);… in read_asc30hmm() 3226 hmm->evparam[p7_FTAU] = hmm->evparam[2]; in read_bin30hmm()
|
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/ |
H A D | fwdback.c | 1139 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main() 1140 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
|
/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/ |
H A D | fwdback.c | 1139 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main() 1140 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
|
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/ |
H A D | fwdback.c | 1152 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main() 1153 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
|
/dports/biology/hmmer/hmmer-3.3/src/impl_sse/ |
H A D | fwdback.c | 1152 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main() 1153 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
|