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Searched refs:p7_FTAU (Results 1 – 14 of 14) sorted by relevance

/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Devalues.c115 hmm->evparam[p7_FTAU] = om->evparam[p7_FTAU] = tau; in p7_Calibrate()
124 gm->evparam[p7_FTAU] = tau; in p7_Calibrate()
H A Dp7_pipeline.c732 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
808 lnP = esl_exp_logsurv (seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
829 …hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
836 …hit->sum_lnP = esl_exp_logsurv (hit->sum_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
855 …hit->dcl[d].lnP = esl_exp_logsurv (hit->dcl[d].bitscore, om->evparam[p7_FTAU], om->evparam[p… in p7_Pipeline()
1080 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
1164 dom_lnP = esl_exp_logsurv(dom_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
1201 … hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
H A Dp7_hmmfile.c609 …if (fprintf(fp, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU]) < 0) ESL_EXCEPTION_SYS(e… in p7_hmmfile_WriteASCII()
613 …if (fprintf(fp, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7_FLAMB… in p7_hmmfile_WriteASCII()
762 sprintf(buff, "%f", hmm->evparam[p7_FTAU])) : in p7_hmmfile_WriteToString()
765 … sprintf(buff, "%8.4f", hmm->evparam[p7_FTAU]) + sprintf(buff, "%8.5f", hmm->evparam[p7_FLAMBDA]))) in p7_hmmfile_WriteToString()
890 …if ((offset =sprintf(ret_hmm + coffset, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU])) … in p7_hmmfile_WriteToString()
897 …tf(ret_hmm + coffset, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7… in p7_hmmfile_WriteToString()
1104 oldparam[2] = hmm->evparam[p7_FTAU]; in p7_hmmfile_WriteBinary()
1457 …else if (strcasecmp(tok2, "FORWARD") == 0) { hmm->evparam[p7_FTAU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm()
1470 …0) { hmm->evparam[p7_FTAU] = atof(tok3);… in read_asc30hmm()
1725 hmm->evparam[p7_FTAU] = hmm->evparam[2]; in read_bin30hmm()
H A Dhmmer.h71 enum p7_evparams_e { p7_MMU = 0, p7_MLAMBDA = 1, p7_VMU = 2, p7_VLAMBDA = 3, p7_FTAU = 4, … enumerator
/dports/biology/hmmer/hmmer-3.3/src/
H A Devalues.c115 hmm->evparam[p7_FTAU] = om->evparam[p7_FTAU] = tau; in p7_Calibrate()
124 gm->evparam[p7_FTAU] = tau; in p7_Calibrate()
H A Dp7_pipeline.c732 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
808 lnP = esl_exp_logsurv (seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
829 …hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
836 …hit->sum_lnP = esl_exp_logsurv (hit->sum_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_Pipeline()
855 …hit->dcl[d].lnP = esl_exp_logsurv (hit->dcl[d].bitscore, om->evparam[p7_FTAU], om->evparam[p… in p7_Pipeline()
1080 P = esl_exp_surv(seq_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
1164 dom_lnP = esl_exp_logsurv(dom_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
1201 … hit->pre_lnP = esl_exp_logsurv (hit->pre_score, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in p7_pli_postViterbi_LongTarget()
H A Dp7_hmmfile.c609 …if (fprintf(fp, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU]) < 0) ESL_EXCEPTION_SYS(e… in p7_hmmfile_WriteASCII()
613 …if (fprintf(fp, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7_FLAMB… in p7_hmmfile_WriteASCII()
762 sprintf(buff, "%f", hmm->evparam[p7_FTAU])) : in p7_hmmfile_WriteToString()
765 … sprintf(buff, "%8.4f", hmm->evparam[p7_FTAU]) + sprintf(buff, "%8.5f", hmm->evparam[p7_FLAMBDA]))) in p7_hmmfile_WriteToString()
890 …if ((offset =sprintf(ret_hmm + coffset, "STATS LOCAL FTAU %f\n", hmm->evparam[p7_FTAU])) … in p7_hmmfile_WriteToString()
897 …tf(ret_hmm + coffset, "STATS LOCAL FORWARD %8.4f %8.5f\n", hmm->evparam[p7_FTAU], hmm->evparam[p7… in p7_hmmfile_WriteToString()
1104 oldparam[2] = hmm->evparam[p7_FTAU]; in p7_hmmfile_WriteBinary()
1457 …else if (strcasecmp(tok2, "FORWARD") == 0) { hmm->evparam[p7_FTAU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm()
1470 …0) { hmm->evparam[p7_FTAU] = atof(tok3);… in read_asc30hmm()
1725 hmm->evparam[p7_FTAU] = hmm->evparam[2]; in read_bin30hmm()
H A Dhmmer.h71 enum p7_evparams_e { p7_MMU = 0, p7_MLAMBDA = 1, p7_VMU = 2, p7_VLAMBDA = 3, p7_FTAU = 4, … enumerator
/dports/biology/infernal/infernal-1.1.3/src/
H A Dcm_p7_modelmaker.c290 hmm->evparam[p7_FTAU] = lftau; in cm_p7_Calibrate()
443 cm->fp7_evparam[CM_p7_LFTAU] = hmm->evparam[p7_FTAU]; in cm_SetFilterHMM()
H A Dcm_file.c2958 …else if (strcasecmp(tok2, "FORWARD") == 0) { hmm->evparam[p7_FTAU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm()
2971 …0) { hmm->evparam[p7_FTAU] = atof(tok3);… in read_asc30hmm()
3226 hmm->evparam[p7_FTAU] = hmm->evparam[2]; in read_bin30hmm()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/
H A Dfwdback.c1139 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main()
1140 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
/dports/biology/hmmer/hmmer-3.3/src/impl_vmx/
H A Dfwdback.c1139 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main()
1140 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
/dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/
H A Dfwdback.c1152 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main()
1153 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()
/dports/biology/hmmer/hmmer-3.3/src/impl_sse/
H A Dfwdback.c1152 P = esl_exp_surv(fsc, om->evparam[p7_FTAU], om->evparam[p7_FLAMBDA]); in main()
1153 gP = esl_exp_surv(gfsc, gm->evparam[p7_FTAU], gm->evparam[p7_FLAMBDA]); in main()