| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | evalues.c | 114 hmm->evparam[p7_VMU] = om->evparam[p7_VMU] = vmu; in p7_Calibrate()
123 gm->evparam[p7_VMU] = vmu; in p7_Calibrate()
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| H A D | p7_hmmfile.c | 612 …if (fprintf(fp, "STATS LOCAL VITERBI %8.4f %8.5f\n", hmm->evparam[p7_VMU], hmm->evparam[p7_VLAMB… in p7_hmmfile_WriteASCII()
764 … sprintf(buff, "%8.4f", hmm->evparam[p7_VMU]) + sprintf(buff, "%8.5f", hmm->evparam[p7_VLAMBDA]) + in p7_hmmfile_WriteToString()
895 …tf(ret_hmm + coffset, "STATS LOCAL VITERBI %8.4f %8.5f\n", hmm->evparam[p7_VMU], hmm->evparam[p7… in p7_hmmfile_WriteToString()
1456 …else if (strcasecmp(tok2, "VITERBI") == 0) { hmm->evparam[p7_VMU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm()
1469 …0) { hmm->evparam[p7_MMU] = hmm->evparam[p7_VMU] = atof(tok3);… in read_asc30hmm()
1727 hmm->evparam[p7_VMU] = hmm->evparam[1]; in read_bin30hmm()
1729 hmm->evparam[p7_MMU] = hmm->evparam[p7_VMU]; in read_bin30hmm()
2438 hmm->evparam[p7_VMU] = hmm->evparam[p7_MMU]; in utest_io_3a()
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| H A D | generic_viterbi.c | 219 invP = esl_gumbel_invsurv(P, gm->evparam[p7_VMU], gm->evparam[p7_VLAMBDA]); in p7_GViterbi_longtarget()
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| H A D | hmmer.h | 71 enum p7_evparams_e { p7_MMU = 0, p7_MLAMBDA = 1, p7_VMU = 2, p7_VLAMBDA = 3, p7_FTAU = 4, … enumerator
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| H A D | p7_pipeline.c | 723 P = esl_gumbel_surv(seq_score, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in p7_Pipeline()
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | evalues.c | 114 hmm->evparam[p7_VMU] = om->evparam[p7_VMU] = vmu; in p7_Calibrate()
123 gm->evparam[p7_VMU] = vmu; in p7_Calibrate()
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| H A D | p7_hmmfile.c | 612 …if (fprintf(fp, "STATS LOCAL VITERBI %8.4f %8.5f\n", hmm->evparam[p7_VMU], hmm->evparam[p7_VLAMB… in p7_hmmfile_WriteASCII()
764 … sprintf(buff, "%8.4f", hmm->evparam[p7_VMU]) + sprintf(buff, "%8.5f", hmm->evparam[p7_VLAMBDA]) + in p7_hmmfile_WriteToString()
895 …tf(ret_hmm + coffset, "STATS LOCAL VITERBI %8.4f %8.5f\n", hmm->evparam[p7_VMU], hmm->evparam[p7… in p7_hmmfile_WriteToString()
1456 …else if (strcasecmp(tok2, "VITERBI") == 0) { hmm->evparam[p7_VMU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm()
1469 …0) { hmm->evparam[p7_MMU] = hmm->evparam[p7_VMU] = atof(tok3);… in read_asc30hmm()
1727 hmm->evparam[p7_VMU] = hmm->evparam[1]; in read_bin30hmm()
1729 hmm->evparam[p7_MMU] = hmm->evparam[p7_VMU]; in read_bin30hmm()
2438 hmm->evparam[p7_VMU] = hmm->evparam[p7_MMU]; in utest_io_3a()
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| H A D | generic_viterbi.c | 219 invP = esl_gumbel_invsurv(P, gm->evparam[p7_VMU], gm->evparam[p7_VLAMBDA]); in p7_GViterbi_longtarget()
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| H A D | hmmer.h | 71 enum p7_evparams_e { p7_MMU = 0, p7_MLAMBDA = 1, p7_VMU = 2, p7_VLAMBDA = 3, p7_FTAU = 4, … enumerator
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| H A D | p7_pipeline.c | 723 P = esl_gumbel_surv(seq_score, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in p7_Pipeline()
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/ |
| H A D | vitfilter.c | 334 invP = esl_gumbel_invsurv(P, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in p7_ViterbiFilter_longtarget()
869 P = esl_gumbel_surv(vfscore, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in main()
873 gP = esl_gumbel_surv(gscore, gm->evparam[p7_VMU], gm->evparam[p7_VLAMBDA]); in main()
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/ |
| H A D | vitfilter.c | 334 invP = esl_gumbel_invsurv(P, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in p7_ViterbiFilter_longtarget()
865 P = esl_gumbel_surv(vfscore, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in main()
869 gP = esl_gumbel_surv(gscore, gm->evparam[p7_VMU], gm->evparam[p7_VLAMBDA]); in main()
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| /dports/biology/hmmer/hmmer-3.3/src/impl_sse/ |
| H A D | vitfilter.c | 334 invP = esl_gumbel_invsurv(P, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in p7_ViterbiFilter_longtarget()
869 P = esl_gumbel_surv(vfscore, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in main()
873 gP = esl_gumbel_surv(gscore, gm->evparam[p7_VMU], gm->evparam[p7_VLAMBDA]); in main()
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| /dports/biology/hmmer/hmmer-3.3/src/impl_vmx/ |
| H A D | vitfilter.c | 334 invP = esl_gumbel_invsurv(P, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in p7_ViterbiFilter_longtarget()
865 P = esl_gumbel_surv(vfscore, om->evparam[p7_VMU], om->evparam[p7_VLAMBDA]); in main()
869 gP = esl_gumbel_surv(gscore, gm->evparam[p7_VMU], gm->evparam[p7_VLAMBDA]); in main()
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| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cm_p7_modelmaker.c | 288 hmm->evparam[p7_VMU] = lvmu; in cm_p7_Calibrate()
441 cm->fp7_evparam[CM_p7_LVMU] = hmm->evparam[p7_VMU]; in cm_SetFilterHMM()
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| H A D | cm_file.c | 2957 …else if (strcasecmp(tok2, "VITERBI") == 0) { hmm->evparam[p7_VMU] = atof(tok3); hmm->evparam[p7_… in read_asc30hmm()
2970 …0) { hmm->evparam[p7_MMU] = hmm->evparam[p7_VMU] = atof(tok3);… in read_asc30hmm()
3228 hmm->evparam[p7_VMU] = hmm->evparam[1]; in read_bin30hmm()
3230 hmm->evparam[p7_MMU] = hmm->evparam[p7_VMU]; in read_bin30hmm()
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