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Searched refs:pairalign_segment (Results 1 – 3 of 3) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dinbuffer.c142 Sequence_T pairalign_segment; member
174 new->pairalign_segment = (Sequence_T) NULL; in Inbuffer_cmdline()
261 new->pairalign_segment = (Sequence_T) NULL; in Inbuffer_new()
312 Inbuffer_read (Sequence_T *pairalign_segment, T this, bool skipp) { in Inbuffer_read() argument
324 if (this->pairalign_segment != NULL) { in Inbuffer_read()
325 Sequence_free(&this->pairalign_segment); in Inbuffer_read()
333 *pairalign_segment = this->pairalign_segment; in Inbuffer_read()
833 Inbuffer_get_request (Sequence_T *pairalign_segment, T this) in Inbuffer_get_request()
866 if (this->pairalign_segment != NULL) { in Inbuffer_get_request()
867 Sequence_free(&this->pairalign_segment); in Inbuffer_get_request()
[all …]
H A Dinbuffer.h94 Inbuffer_read (Sequence_T *pairalign_segment, T this, bool skipp);
107 Inbuffer_get_request (Sequence_T *pairalign_segment, T this);
H A Dgmap.c4670 Sequence_T queryseq, usersegment, pairalign_segment; in worker_mpi_process() local
4725 (queryseq = Inbuffer_read(&pairalign_segment,inbuffer,/*skipp*/true)) != NULL) { in worker_mpi_process()
4733 } else if ((queryseq = Inbuffer_read(&pairalign_segment,inbuffer,/*skipp*/false)) == NULL) { in worker_mpi_process()
4782 usersegment = pairalign_segment; in worker_mpi_process()
4885 Sequence_T usersegment, pairalign_segment; in single_thread() local
4921 while ((request = Inbuffer_get_request(&pairalign_segment,inbuffer)) != NULL) { in single_thread()
4968 usersegment = pairalign_segment; in single_thread()
5049 Sequence_T queryseq, usersegment, pairalign_segment; in worker_thread() local
5090 while ((request = Inbuffer_get_request(&pairalign_segment,inbuffer)) != NULL) { in worker_thread()
5142 usersegment = pairalign_segment; in worker_thread()