Searched refs:pairlength_deviation (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | gsnap.c | 322 static int pairlength_deviation = 100; variable 2021 pairlength_deviation = atoi(check_valid_int(optarg)); in parse_command_line() 3498 min_intronlength,expected_pairlength,pairlength_deviation, in worker_setup() 3510 expected_pairlength,pairlength_deviation, in worker_setup() 3520 expected_pairlength,pairlength_deviation,circularp,merge_samechr_p); in worker_setup() 4591 ",pairlength_deviation); in print_program_usage()
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H A D | concordance.c | 28 static Chrpos_T pairlength_deviation; variable 1858 pairlength_deviation = pairlength_deviation_in; in Concordance_setup() 1859 adjacent_pairlength = expected_pairlength + pairlength_deviation; in Concordance_setup()
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H A D | stage3hr.c | 211 static Chrpos_T pairlength_deviation; variable 291 pairlength_deviation = pairlength_deviation_in; in Stage3hr_setup() 293 if (pairlength_deviation > expected_pairlength) { in Stage3hr_setup() 296 expected_pairlength_low = expected_pairlength - pairlength_deviation; in Stage3hr_setup() 298 expected_pairlength_high = expected_pairlength + pairlength_deviation; in Stage3hr_setup() 299 expected_pairlength_very_high = expected_pairlength + 10*pairlength_deviation; in Stage3hr_setup() 11715 if (new->absdifflength <= pairlength_deviation) { in Stage3pair_new() 12632 } else if (best_hitpair->absdifflength <= (Chrpos_T) pairlength_deviation && in hitpair_goodness_cmp() 12633 hitpair->absdifflength > (Chrpos_T) pairlength_deviation) { in hitpair_goodness_cmp() 12637 } else if (hitpair->absdifflength <= (Chrpos_T) pairlength_deviation && in hitpair_goodness_cmp() [all …]
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H A D | stage1hr.c | 201 static Chrpos_T pairlength_deviation; variable 3099 pairlength_deviation = pairlength_deviation_in; in Stage1hr_setup()
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/dports/biology/gmap/gmap-2020-09-12/ |
H A D | ChangeLog | 10294 pairlength_deviation variables. 12132 expected_pairlength and pairlength_deviation values in Stage3hr_setup, and 15108 * stage3hr.c: Using pairlength_deviation to eliminate pairs, even if 15322 for pairlength_deviation
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