| /dports/biology/p5-BioPerl/BioPerl-1.7.7/t/Matrix/ |
| H A D | Matrix.t | 89 my $pam_matrix = $io->next_matrix;
91 is($pam_matrix->entropy, 0.354);
92 is($pam_matrix->expected_score, -0.844);
93 is($pam_matrix->scale, 'ln(2)/3');
94 is($pam_matrix->num_rows,24);
95 is($pam_matrix->get_entry('G','*'), -8);
96 is($pam_matrix->get_entry('V','Y'), -2);
97 is($pam_matrix->get_entry('Y','V'), -2);
98 is($pam_matrix->get_entry('L','I'), 2);
99 @diag = $pam_matrix->get_diagonal;
[all …]
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| /dports/net/ocserv/ocserv-1.1.3/tests/data/pam/ |
| H A D | ocserv.in | 2 auth required @PAMWRAPDIR@/pam_matrix.so passdb=%PAM_WRAPPER_SERVICE_DIR%/passdb
3 account required @PAMWRAPDIR@/pam_matrix.so passdb=%PAM_WRAPPER_SERVICE_DIR%/passdb
4 account required @PAMWRAPDIR@/pam_matrix.so passdb=%PAM_WRAPPER_SERVICE_DIR%/passdb
5 session required @PAMWRAPDIR@/pam_matrix.so passdb=%PAM_WRAPPER_SERVICE_DIR%/passdb
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| /dports/security/libssh/libssh-0.9.6/tests/etc/pam.d/ |
| H A D | sshd.in | 1 auth required @PAM_WRAPPER_MODULE_DIR@/pam_matrix.so passdb=@CMAKE_CURRENT_BINARY_DIR@/et…
2 account required @PAM_WRAPPER_MODULE_DIR@/pam_matrix.so passdb=@CMAKE_CURRENT_BINARY_DIR@/et…
3 password required @PAM_WRAPPER_MODULE_DIR@/pam_matrix.so passdb=@CMAKE_CURRENT_BINARY_DIR@/et…
4 session required @PAM_WRAPPER_MODULE_DIR@/pam_matrix.so passdb=@CMAKE_CURRENT_BINARY_DIR@/et…
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| /dports/biology/fasta/fasta/ |
| H A D | lx_band2.c | 30 int **pam_matrix, /* scoring matrix */ in lx_align() argument
69 wt = pam_matrix[prot_seq[i]]; in lx_align()
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| H A D | lx_align3.c | 46 int **pam_matrix, /* scoring matrix */ in pro_dna() argument
65 score = local_align(&x, &y, &ex, &ey, pam_matrix,dna_prot_seq, len_dna_prot, in pro_dna()
68 align = global(x, y, ex, ey, pam_matrix, dna_prot_seq, prot_seq, 0, 0); in pro_dna()
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| /dports/devel/pam_wrapper/pam_wrapper-1.0.6/ |
| H A D | ChangeLog | 36 - pam_matrix
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| /dports/net/ocserv/ocserv-1.1.3/ |
| H A D | configure.ac | 634 if test -f $CWRAP_PAM_MODULES/pam_matrix.so;then
636 elif test -f /usr/lib64/pam_wrapper/pam_matrix.so;then
638 elif test -f /usr/lib/pam_wrapper/pam_matrix.so;then
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| H A D | configure | 23819 if test -f $CWRAP_PAM_MODULES/pam_matrix.so;then
23822 elif test -f /usr/lib64/pam_wrapper/pam_matrix.so;then
23825 elif test -f /usr/lib/pam_wrapper/pam_matrix.so;then
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| H A D | ChangeLog | 5337 tests: pam-test was restricted to pam_matrix
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| /dports/biology/fasta3/fasta-36.3.8/src/ |
| H A D | dropfx2.c | 182 int **pam_matrix, int gopen, int gext,
1265 int **pam_matrix, /* scoring matrix */ argument
1319 wt = pam_matrix[prot_seq[i]];
1468 int **pam_matrix, /* scoring matrix */ argument
1493 score= local_align(&x, &y, &ex, &ey, pam_matrix,
1508 align = global(x, y, ex, ey, pam_matrix, gopen, gex, gshift,
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| H A D | dropfx.c | 180 int **pam_matrix, int gopen, int gext,
1263 int **pam_matrix, /* scoring matrix */ argument
1317 wt = pam_matrix[prot_seq[i]];
1466 int **pam_matrix, /* scoring matrix */ argument
1491 score= local_align(&x, &y, &ex, &ey, pam_matrix,
1506 align = global(x, y, ex, ey, pam_matrix, gopen, gex, gshift,
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| H A D | dropfz3.c | 181 int **pam_matrix, int gopen, int gext,
1402 int **pam_matrix, /* scoring matrix */ argument
1590 int **pam_matrix, /* scoring matrix */ argument
1610 pam_matrix, gopen, gext,
1623 pam_matrix, gopen, gext,
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| H A D | dropfz2.c | 181 int **pam_matrix, int gopen, int gext,
1402 int **pam_matrix, /* scoring matrix */ argument
1590 int **pam_matrix, /* scoring matrix */ argument
1610 pam_matrix, gopen, gext,
1623 pam_matrix, gopen, gext,
|