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Searched refs:partitionLH (Results 1 – 5 of 5) sorted by relevance

/dports/biology/iqtree/IQ-TREE-2.0.6/pll/
H A DgenericParallelization.c1206 buf[model] = localPr->partitionData[model]->partitionLH; in reduceEvaluateIterative()
1218 buf[model] = localPr->partitionData[model]->partitionLH; in reduceEvaluateIterative()
1230 localPr->partitionData[model]->partitionLH = targetBuf[model]; in reduceEvaluateIterative()
1865 pr->partitionData[j]->partitionLH = partitionResult; in pllMasterPostBarrier()
2039 localPr->partitionData[model]->partitionLH = 0.0; in assignAndInitPart1()
H A DoptimizeModel.c458 assert(pr->partitionData[index]->partitionLH <= 0.0); in evaluateChange()
459 result[pos] -= pr->partitionData[index]->partitionLH; in evaluateChange()
1334 pr->partitionData[j]->lg4x_weightLikelihood = pr->partitionData[j]->partitionLH; in optParamGeneric()
1361 startLH[pos] += pr->partitionData[index]->partitionLH; in optParamGeneric()
2721 if (pr->partitionData[partitionIndex]->partitionLH > bestScores[partitionIndex]) { in optimizeProteinModels()
2723 bestScores[partitionIndex] = pr->partitionData[partitionIndex]->partitionLH; in optimizeProteinModels()
H A Dpll.h1003 double partitionLH; member
H A DevaluateGenericSpecial.c1740 pr->partitionData[model]->partitionLH = partitionLikelihood; in pllEvaluateIterative()
1752 pr->partitionData[model]->partitionLH = 0.0; in pllEvaluateIterative()
1947 result += pr->partitionData[model]->partitionLH; in pllEvaluateLikelihood()
H A Dutils.c1206 pl->partitionData[i]->partitionLH = 0.0; in createPartitions()