Searched refs:pcaModel (Results 1 – 4 of 4) sorted by relevance
58 PCAModel pcaModel; field in PCAPanel137 pcaModel.calculate(); in run()143 pcaModel.updateRc(rc); in run()145 top = pcaModel.getTop(); in run()215 if (!pcaModel.isNucleotide()) in itemStateChanged()217 pcaModel.setNucleotide(true); in itemStateChanged()220 pcaModel.setScoreModel(scoreModel); in itemStateChanged()226 if (pcaModel.isNucleotide()) in itemStateChanged()228 pcaModel.setNucleotide(false); in itemStateChanged()231 pcaModel.setScoreModel(scoreModel); in itemStateChanged()[all …]
99 val pcaModel = pca.fit(input) constant100 copyValues(new PCAModel(uid, pcaModel.pc, pcaModel.explainedVariance).setParent(this))152 val pcaModel = new feature.PCAModel($(k), constant157 val transformer: Vector => Vector = v => pcaModel.transform(OldVectors.fromML(v)).asML
74 private PCAModel pcaModel; field in PCAPanel756 return pcaModel; in getPcaModel()759 public void setPcaModel(PCAModel pcaModel) in setPcaModel() argument761 this.pcaModel = pcaModel; in setPcaModel()
1710 PCAModel pcaModel = panel.getPcaModel(); in savePCA() local1711 viewer.setScoreModelName(pcaModel.getScoreModelName()); in savePCA()1733 SimilarityParamsI sp = pcaModel.getSimilarityParameters(); in savePCA()1742 for (jalview.datamodel.SequencePoint spt : pcaModel in savePCA()1772 PCA pca = pcaModel.getPcaData(); in savePCA()