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Searched refs:pct_coverage (Results 1 – 25 of 52) sorted by relevance

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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/gff3writer_test_cases/
H A Dmss-389-frameshift.align.gff34 …num_ident=4224;num_mismatch=1062;num_negatives=618;num_positives=4668;pct_coverage=99.83;pct_cover…
6 …;num_ident=2325;num_mismatch=857;num_negatives=444;num_positives=2739;pct_coverage=96.6879;pct_cov…
8 …;num_ident=2823;num_mismatch=380;num_negatives=177;num_positives=3027;pct_coverage=98.6753;pct_cov…
10 …;num_ident=2325;num_mismatch=863;num_negatives=456;num_positives=2733;pct_coverage=97.403;pct_cove…
12 …;num_ident=2352;num_mismatch=833;num_negatives=438;num_positives=2748;pct_coverage=97.1333;pct_cov…
14 …;num_ident=2274;num_mismatch=908;num_negatives=465;num_positives=2718;pct_coverage=97.2197;pct_cov…
16 …;num_ident=2271;num_mismatch=899;num_negatives=447;num_positives=2724;pct_coverage=96.7643;pct_cov…
18 …;num_ident=2181;num_mismatch=941;num_negatives=516;num_positives=2607;pct_coverage=95.3865;pct_cov…
20 …;num_ident=2259;num_mismatch=863;num_negatives=411;num_positives=2712;pct_coverage=94.8648;pct_cov…
22 …;num_ident=2298;num_mismatch=797;num_negatives=423;num_positives=2673;pct_coverage=94.8223;pct_cov…
H A Dmss-389-reverse-shift.align.gff34 …ngth=1;num_ident=402;num_mismatch=2;num_negatives=3;num_positives=402;pct_coverage=99.7531;pct_cov…
6 …h=7;num_ident=558;num_mismatch=116;num_negatives=57;num_positives=618;pct_coverage=97.6812;pct_cov…
8 …h=10;num_ident=354;num_mismatch=95;num_negatives=60;num_positives=390;pct_coverage=97.1861;pct_cov…
10 …h=7;num_ident=546;num_mismatch=107;num_negatives=75;num_positives=579;pct_coverage=98.4917;pct_cov…
12 …th=1;num_ident=195;num_mismatch=89;num_negatives=39;num_positives=246;pct_coverage=99.6491;pct_cov…
H A Dmss-389-reverse-shift.align.asn54 id str "pct_coverage",
160 id str "pct_coverage",
273 id str "pct_coverage",
384 id str "pct_coverage",
492 id str "pct_coverage",
H A Dmss-389-frameshift.align.asn54 id str "pct_coverage",
193 id str "pct_coverage",
331 id str "pct_coverage",
468 id str "pct_coverage",
604 id str "pct_coverage",
742 id str "pct_coverage",
880 id str "pct_coverage",
1020 id str "pct_coverage",
1154 id str "pct_coverage",
1288 id str "pct_coverage",
H A Dmss-406-end-gap.align.gff34 …mic_to_genomic=1;num_ident=1012;num_ident_quantized=3;num_mismatch=16;pct_coverage=0.00126608;pct_…
H A Dmss-406-begin-gap.align.gff34 …mic_to_genomic=1;num_ident=11696;num_ident_quantized=4;num_mismatch=7;pct_coverage=0.0129523;pct_c…
H A Dmss-406-end-gap.align.asn25 id str "pct_coverage",
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/
H A Dscore_builder_base.cpp561 *pct_coverage = 0; in s_GetPercentCoverage()
600 *pct_coverage = 0; in s_GetPercentCoverage()
693 double pct_coverage = 0; in GetPercentCoverage() local
698 return pct_coverage; in GetPercentCoverage()
706 double pct_coverage = 0; in GetPercentCoverage() local
708 return pct_coverage; in GetPercentCoverage()
716 double pct_coverage = 0; in GetPercentCoverage() local
718 return pct_coverage; in GetPercentCoverage()
1268 double pct_coverage = 0; in ComputeScore() local
1270 return pct_coverage; in ComputeScore()
[all …]
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/
H A Dscore_builder_base.cpp561 *pct_coverage = 0; in s_GetPercentCoverage()
600 *pct_coverage = 0; in s_GetPercentCoverage()
693 double pct_coverage = 0; in GetPercentCoverage() local
698 return pct_coverage; in GetPercentCoverage()
706 double pct_coverage = 0; in GetPercentCoverage() local
708 return pct_coverage; in GetPercentCoverage()
716 double pct_coverage = 0; in GetPercentCoverage() local
718 return pct_coverage; in GetPercentCoverage()
1268 double pct_coverage = 0; in ComputeScore() local
1270 return pct_coverage; in ComputeScore()
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/mergetree/tests/
H A DNC_000001_9_NC_000001_11.asnt26 id str "pct_coverage",
144 id str "pct_coverage",
482 id str "pct_coverage",
1080 id str "pct_coverage",
1178 id str "pct_coverage",
1316 id str "pct_coverage",
1404 id str "pct_coverage",
1502 id str "pct_coverage",
1900 id str "pct_coverage",
2038 id str "pct_coverage",
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/unit_test/data/
H A D157696450.asn38 id str "pct_coverage",
109 id str "pct_coverage",
470 id str "pct_coverage",
971 id str "pct_coverage",
1462 id str "pct_coverage",
1693 id str "pct_coverage",
2524 id str "pct_coverage",
2695 id str "pct_coverage",
4676 id str "pct_coverage",
5217 id str "pct_coverage",
[all …]
H A D157696307.asn38 id str "pct_coverage",
1009 id str "pct_coverage",
1280 id str "pct_coverage",
1461 id str "pct_coverage",
1702 id str "pct_coverage",
2143 id str "pct_coverage",
2304 id str "pct_coverage",
2445 id str "pct_coverage",
3116 id str "pct_coverage",
3467 id str "pct_coverage",
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/pslwriter_test_cases/
H A Drw-255-dense.asn147 id str "pct_coverage",
245 id str "pct_coverage",
353 id str "pct_coverage",
756 id str "pct_coverage",
1524 id str "pct_coverage",
1772 id str "pct_coverage",
1885 id str "pct_coverage",
1988 id str "pct_coverage",
2186 id str "pct_coverage",
2339 id str "pct_coverage",
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gff3reader_test_cases/
H A Drw-228.gff3172 …ty=0.980574;idty=0.989011;matches=1060;num_ident=1060;num_mismatch=15;pct_coverage=100;pct_coverag…
176 …;identity=0.980574;idty=1;matches=1060;num_ident=1060;num_mismatch=15;pct_coverage=100;pct_coverag…
179 …2;identity=0.961102;idty=1;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
180 …2;identity=0.961102;idty=1;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
181 …ity=0.961102;idty=0.966667;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
182 …ity=0.961102;idty=0.995169;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
183 …ity=0.961102;idty=0.993007;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
184 …2;identity=0.961102;idty=1;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
193 …;identity=0.988609;idty=1;matches=1649;num_ident=1649;num_mismatch=16;pct_coverage=99.88;pct_cover…
203 …6.1 1 235 +;for_remapping=2;gap_count=1;num_ident=2423;num_mismatch=0;pct_coverage=99.9587;pct_cov…
[all …]
H A Drw-225.gff34 …2;gap_count=1;hsp_percent_coverage=100;num_ident=35578;num_mismatch=1;pct_coverage=99.9972;pct_cov…
H A Dalignment.gff34 …81;common_component=1;filter_score=0;num_ident=122245;num_mismatch=82;pct_coverage=95.2814;pct_ide…
H A Drw-225.asn59 id str "pct_coverage",
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gff3reader_test_cases_genbank/
H A Drw-228.gff3172 …ty=0.980574;idty=0.989011;matches=1060;num_ident=1060;num_mismatch=15;pct_coverage=100;pct_coverag…
176 …;identity=0.980574;idty=1;matches=1060;num_ident=1060;num_mismatch=15;pct_coverage=100;pct_coverag…
179 …2;identity=0.961102;idty=1;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
180 …2;identity=0.961102;idty=1;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
181 …ity=0.961102;idty=0.966667;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
182 …ity=0.961102;idty=0.995169;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
183 …ity=0.961102;idty=0.993007;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
184 …2;identity=0.961102;idty=1;matches=1186;num_ident=1186;num_mismatch=6;pct_coverage=96.5964;pct_cov…
193 …;identity=0.988609;idty=1;matches=1649;num_ident=1649;num_mismatch=16;pct_coverage=99.88;pct_cover…
203 …6.1 1 235 +;for_remapping=2;gap_count=1;num_ident=2423;num_mismatch=0;pct_coverage=99.9587;pct_cov…
[all …]
H A Drw-225.gff34 …2;gap_count=1;hsp_percent_coverage=100;num_ident=35578;num_mismatch=1;pct_coverage=99.9972;pct_cov…
H A Dalignment.gff34 …81;common_component=1;filter_score=0;num_ident=122245;num_mismatch=82;pct_coverage=95.2814;pct_ide…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/app/
H A Dngalign_simple.ini28 perfect = " pct_identity_ungap >= 99.0 AND pct_coverage >= 99.0 AND common_component = 1 "
29 good = " pct_identity_ungap >= 99.0 AND pct_coverage >= 99.0 "
30 ok = " pct_identity_ungap >= 95.0 AND pct_coverage >= 95.0 "
31 terrible = " pct_identity_ungap >= 80.0 AND pct_coverage >= 25.0 "
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/gff3flybasewriter_test_cases/
H A D5E09_A.asn54 id str "pct_coverage",
202 id str "pct_coverage",
H A D5E09_A.gff38 …62317 10033317 10033424 +;def=Chain A%2C Dpr6%2C isoform C;taxid=7227;pct_coverage=96.3636;pct_ide…
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/alnwriter_test_cases/
H A Ddenseg-mixed-strands-with-gi.asn54 id str "pct_coverage",
H A Ddenseg-mixed-strands.asn54 id str "pct_coverage",

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