| /dports/biology/lamarc/lamarc-2.1.8/src/convParse/ |
| H A D | gc_genotype_resolution.cpp | 22 GCHaplotypeProbability::GCHaplotypeProbability(double penetrance, wxArrayString alleleNames) in GCHaplotypeProbability() argument
24 m_penetrance(penetrance) in GCHaplotypeProbability()
26 if(penetrance < 0) in GCHaplotypeProbability()
28 throw gc_haplotype_probability_negative(penetrance); in GCHaplotypeProbability()
90 GCGenotypeResolution::AppendHap(double penetrance, wxArrayString alleles) in AppendHap() argument
92 m_probabilities.push_back(GCHaplotypeProbability(penetrance,alleles)); in AppendHap()
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| H A D | gc_genotype_resolution.h | 27 GCHaplotypeProbability(double penetrance, wxArrayString alleleNames);
47 void AppendHap(double penetrance, wxArrayString alleleNames);
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| /dports/biology/lamarc/lamarc-2.1.8/src/convModel/ |
| H A D | gc_phenotype.cpp | 24 m_penetrance(gcdefault::penetrance) in gcHapProbability()
46 gcHapProbability::SetPenetrance(double penetrance) in SetPenetrance() argument
48 if(penetrance < 0) in SetPenetrance()
50 throw gc_haplotype_probability_negative(penetrance); in SetPenetrance()
53 m_penetrance = penetrance; in SetPenetrance()
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| H A D | gc_default.h | 29 static const double penetrance; variable
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| H A D | gc_default.cpp | 24 const double gcdefault::penetrance = 0.0; member in gcdefault
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| H A D | gc_phenotype.h | 34 void SetPenetrance(double penetrance);
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| H A D | gc_datastore_readcmd.cpp | 900 double penetrance = tiwx_double_from_text(probElem); in cmdParseGenoResolution() local
901 hapProb.SetPenetrance(penetrance); in cmdParseGenoResolution()
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| /dports/biology/lamarc/lamarc-2.1.8/src/datalike/ |
| H A D | haplotypes.h | 46 void AddHaplotype(StringVec1d alleles, double penetrance);
47 void AddHaplotype(std::multiset<std::string> alleles, double penetrance);
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| H A D | phenotypes.cpp | 50 void Phenotypes::AddPhenotype(const StringVec1d& alleles, string name, double penetrance) in AddPhenotype() argument
64 (*genotype).second.second.push_back(penetrance); in AddPhenotype()
178 double penetrance = (*genotype).second.second[phenNum]; in MakeHaplotypes() local
188 (*hap).second.AddHaplotype(alleles, penetrance); in MakeHaplotypes()
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| H A D | haplotypes.cpp | 122 void Haplotypes::AddHaplotype(StringVec1d alleles, double penetrance) in AddHaplotype() argument
154 m_penetrances.push_back(penetrance); in AddHaplotype()
159 void Haplotypes::AddHaplotype(multiset<string> alleles, double penetrance) in AddHaplotype() argument
164 AddHaplotype(allAlleles[alleleVec], penetrance); in AddHaplotype()
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| H A D | phenotypes.h | 54 void AddPhenotype(const StringVec1d& alleles, string name, double penetrance);
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| /dports/biology/lamarc/lamarc-2.1.8/src/ui_vars/ |
| H A D | ui_vars_traitmodels.h | 50 void AddPhenotype(StringVec1d& alleles, string name, double penetrance);
80 void AddPhenotype(UIRegId regID, StringVec1d& alleles, string name, double penetrance);
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| H A D | ui_vars_traitmodels.cpp | 114 void UIVarsSingleTraitModel::AddPhenotype(StringVec1d& alleles, string name, double penetrance) in AddPhenotype() argument
116 m_phenotypes.AddPhenotype(alleles, name, penetrance); in AddPhenotype()
227 …IVarsTraitModels::AddPhenotype(UIRegId regID, StringVec1d& alleles, string name, double penetrance) in AddPhenotype() argument
230 m_individualModels.find(regID)->second.AddPhenotype(alleles, name, penetrance); in AddPhenotype()
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| /dports/biology/lamarc/lamarc-2.1.8/src/tree/ |
| H A D | individual.h | 68 …ddHaplotype(long regnum, string lname, long marker, const StringVec1d& alleles, double penetrance);
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| H A D | individual.cpp | 160 const StringVec1d& alleles, double penetrance) in AddHaplotype() argument
170 hap->second.AddHaplotype(alleles, penetrance); in AddHaplotype()
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| /dports/biology/lamarc/lamarc-2.1.8/src/xml/ |
| H A D | parsetreetodata.cpp | 547 double penetrance = 1.0; in DoGenotypeResolutions() local
550 penetrance = ProduceDoubleOrBarf(getNodeText(penetranceElement)); in DoGenotypeResolutions()
556 m_currIndividual.AddHaplotype(m_pCurrRegion->GetID(), tname, 0, alleles, penetrance); in DoGenotypeResolutions()
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| H A D | parsetreetosettings.cpp | 1445 double penetrance = ProduceDoubleOrBarf(getNodeText(penetranceElement)); in DoPhenotypes() local
1447 … uiInterface.GetCurrentVars().traitmodels.AddPhenotype(locId, alleles, phenName, penetrance); in DoPhenotypes()
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| /dports/biology/mapm3/mapm3-3.0_1/mapm/ |
| H A D | mapmhelp.src | 1957 MAPMAKER) to the true genotype (essentially as a penetrance function).
1958 When using ANY MAPMAKER multipoint analysis feature, the penetrance
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| /dports/textproc/htdig/htdig-3.2.0b6/installdir/ |
| H A D | english.0 | 59645 penetrance/S
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| /dports/chinese/dictd-database/dict-zh-1.6/src/data/ |
| H A D | moers2-dict-u8 | 50628 penetrance 滲透率
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| /dports/editors/wordgrinder/wordgrinder-0.6/extras/ |
| H A D | british.dictionary | 120909 penetrance
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| H A D | american-canadian.dictionary | 120388 penetrance
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| /dports/security/md5deep/hashdeep-cd2ed74/tests/testfiles/dir_a/ |
| H A D | web2 | 141593 penetrance
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| /dports/games/tanglet/tanglet-1.6.0/wordlists/ |
| H A D | en | 157251 penetrance
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| /dports/chinese/dictd-database/dict-zh-1.6/ |
| H A D | moecomp.index | 50909 penetrance HUfo V
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