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Searched refs:pheno_mean (Results 1 – 8 of 8) sorted by relevance

/dports/biology/gemma/GEMMA-0.98.3/src/
H A Dbslmmdap.h44 double pheno_mean; variable
H A Dbslmm.cpp63 pheno_mean = cPar.pheno_mean; in CopyFromParam()
110 cPar.pheno_mean = pheno_mean; in CopyToParam()
918 pheno_mean = 0.0; in MCMC()
1145 pheno_mean += mean_z; in MCMC()
1173 pheno_mean /= (double)w; in MCMC()
1613 pheno_mean = 0.0; in MCMC()
1828 pheno_mean += mean_z; in MCMC()
H A Dbslmm.h48 double pheno_mean; variable
H A Dparam.h186 double pheno_mean; // Phenotype mean from BSLMM fitting or prediction. variable
H A Dgemma_io.h43 bool ReadFile_log(const string &file_log, double &pheno_mean);
H A Dparam.cpp99 em_iter(10000), nr_iter(100), crt(0), pheno_mean(0), noconstrain(false), in PARAM()
200 if (ReadFile_log(file_log, pheno_mean) == false) { in ReadFiles()
911 if (!file_log.empty() && pheno_mean != 0) { in CheckParam()
H A Dgemma.cpp1016 cPar.pheno_mean = atof(str.c_str()); in Assign()
1708 gsl_vector_add_constant(y_prdt, cPar.pheno_mean); in BatchRun()
2866 cPar.pheno_mean = CenterVector(y); in BatchRun()
2976 cPar.pheno_mean = CenterVector(y); in BatchRun()
3507 outfile << "## estimated mean = " << cPar.pheno_mean << endl; in WriteLog()
H A Dgemma_io.cpp238 bool ReadFile_log(const string &file_log, double &pheno_mean) { in ReadFile_log() argument
261 pheno_mean = atof(ch_ptr); in ReadFile_log()