/dports/biology/plink/plink-ng-79b2df8c/2.0/ |
H A D | plink2_psam.cc | 293 char* pheno_names; in LoadPsam() local 294 if (unlikely(pgl_malloc(pheno_ct * max_pheno_name_blen, &pheno_names))) { in LoadPsam() 297 *pheno_names_ptr = pheno_names; in LoadPsam() 300 strcpy(&(pheno_names[pheno_idx * max_pheno_name_blen]), pheno_names_reverse_ll->str); in LoadPsam() 860 char* pheno_names = nullptr; in LoadPhenos() local 986 if (unlikely(pgl_malloc(final_pheno_names_byte_ct, &pheno_names))) { in LoadPhenos() 990 char* pheno_names_iter = &(pheno_names[old_pheno_ct * max_pheno_name_blen]); in LoadPhenos() 1069 if (unlikely(pgl_malloc(final_pheno_names_byte_ct, &pheno_names))) { in LoadPhenos() 1098 const char* duplicate_pheno_name = &(pheno_names[duplicate_idx * max_pheno_name_blen]); in LoadPhenos() 1434 *pheno_names_ptr = pheno_names; in LoadPhenos() [all …]
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H A D | plink2_filter.h | 77 PglErr RequirePheno(const PhenoCol* pheno_cols, const char* pheno_names, const char* require_pheno_… 79 PglErr KeepRemoveIf(const CmpExpr* cmp_expr, const PhenoCol* pheno_cols, const char* pheno_names, c… 81 …ed, const char* cat_phenoname, const PhenoCol* pheno_cols, const char* pheno_names, const PhenoCol…
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H A D | plink2_misc.h | 323 …nst char* vstd_flattened, const uintptr_t* sample_include, const char* pheno_names, uint32_t raw_s… 325 …har* quantnorm_flattened, const uintptr_t* sample_include, const char* pheno_names, uint32_t raw_s… 331 …ip, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uint32_t… 345 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const PhenoCol…
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H A D | plink2_data.h | 95 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uint32_t… 97 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uint32_t…
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H A D | plink2_export.h | 59 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uintptr_…
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H A D | plink2_glm.h | 122 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const PhenoCol…
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H A D | plink2_matrix_calc.h | 187 …ip, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uintptr_…
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H A D | plink2.cc | 679 char* pheno_names = nullptr; in Plink2Core() local 1392 …reterr = RequirePheno(pheno_cols, pheno_names, pcp->require_pheno_flattened, raw_sample_ct, pheno_… in Plink2Core() 1496 …reterr = KeepRemoveIf(&(pcp->keep_if_expr), pheno_cols, pheno_names, covar_cols, covar_names, raw_… in Plink2Core() 1502 …reterr = KeepRemoveIf(&(pcp->remove_if_expr), pheno_cols, pheno_names, covar_cols, covar_names, ra… in Plink2Core() 1553 …mple_include, raw_sample_ct, pcp->pheno_transform_flags, &pheno_cols, &pheno_names, &pheno_ct, &ma… in Plink2Core() 1562 …reterr = PhenoQuantileNormalize(pcp->quantnorm_flattened, sample_include, pheno_names, raw_sample_… in Plink2Core() 1577 …reterr = PhenoVarianceStandardize(pcp->vstd_flattened, sample_include, pheno_names, raw_sample_ct,… in Plink2Core() 1610 … if (memequal(loop_cats_phenoname, &(pheno_names[pheno_idx * max_pheno_name_blen]), name_blen)) { in Plink2Core() 1625 …memcpy(&(pheno_names[pheno_idx2 * max_pheno_name_blen]), &(pheno_names[(pheno_idx2 + 1) * max_phen… in Plink2Core() 2511 …reterr = WriteCovar(sample_include, &pii, sex_nm, sex_male, pheno_cols, pheno_names, covar_cols, c… in Plink2Core() [all …]
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H A D | plink2_misc.cc | 1149 char* pheno_names; in Plink1ClusterImport() local 1150 if (unlikely(pgl_malloc(new_pheno_names_byte_ct, &pheno_names))) { in Plink1ClusterImport() 1154 memcpy(pheno_names, old_pheno_names, old_pheno_ct * new_max_pheno_name_blen); in Plink1ClusterImport() 1157 …strcpy(&(pheno_names[pheno_idx * new_max_pheno_name_blen]), &(old_pheno_names[pheno_idx * old_max_… in Plink1ClusterImport() 1160 … memcpy(&(pheno_names[old_pheno_ct * new_max_pheno_name_blen]), catpheno_name, catpheno_name_blen); in Plink1ClusterImport() 1162 *pheno_names_ptr = pheno_names; in Plink1ClusterImport() 2780 PopulateStrboxHtable(pheno_names, pheno_ct, max_pheno_name_blen, id_htable_size, id_htable); in PhenoVarianceStandardize() 2785 …uint32_t pheno_idx = StrboxHtableFind(vstd_phenonames_iter, pheno_names, id_htable, max_pheno_name… in PhenoVarianceStandardize() 2909 PopulateStrboxHtable(pheno_names, pheno_ct, max_pheno_name_blen, id_htable_size, id_htable); in PhenoQuantileNormalize() 4143 cswritep = strcpya(cswritep, &(pheno_names[pheno_idx * max_pheno_name_blen])); in WriteMissingnessReports() [all …]
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H A D | plink2_filter.cc | 1562 PglErr RequirePheno(const PhenoCol* pheno_cols, const char* pheno_names, const char* require_pheno_… in RequirePheno() argument 1592 const char* cur_pheno_name = &(pheno_names[pheno_idx * max_pheno_name_blen]); in RequirePheno() 1626 PglErr KeepRemoveIf(const CmpExpr* cmp_expr, const PhenoCol* pheno_cols, const char* pheno_names, c… in KeepRemoveIf() argument 1639 if (memequal(cur_name, &(pheno_names[pheno_idx * max_pheno_name_blen]), name_blen)) { in KeepRemoveIf() 1968 …ed, const char* cat_phenoname, const PhenoCol* pheno_cols, const char* pheno_names, const PhenoCol… in KeepRemoveCats() argument 2018 if (memequal(cat_phenoname, &(pheno_names[pheno_idx * max_pheno_name_blen]), name_blen)) { in KeepRemoveCats()
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H A D | plink2_data.cc | 956 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uint32_t… in WritePsam() argument 1003 const char* cur_pheno_name = &(pheno_names[pheno_idx * max_pheno_name_blen]); in WritePsam() 6633 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uint32_t… 6656 …reterr = WritePsam(outname, sample_include, piip, sex_nm, sex_male, pheno_cols, pheno_names, new_s… 7874 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uint32_t… 8100 …reterr = WritePsam(outname, sample_include, piip, sex_nm, sex_male, pheno_cols, pheno_names, new_s…
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H A D | plink2_glm.cc | 9707 …(const uintptr_t* pheno_batch, const PhenoCol* pheno_cols, const char* pheno_names, const char* co… in GlmLinearBatch() argument 10026 const char* cur_pheno_name = &(pheno_names[pheno_uidx * max_pheno_name_blen]); in GlmLinearBatch() 10156 …logprintfww5("--glm linear regression on phenotype '%s': ", &(pheno_names[pheno_uidx_start * max_p… in GlmLinearBatch() 10653 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const PhenoCol… in GlmMain() argument 11426 const char* cur_pheno_name = &(pheno_names[pheno_uidx * max_pheno_name_blen]); in GlmMain() 11492 const char* first_pheno_name = &(pheno_names[pheno_uidx * max_pheno_name_blen]); in GlmMain() 11884 …char* outname_end2 = strcpya(&(outname_end[1]), &(pheno_names[pheno_uidx2 * max_pheno_name_blen])); in GlmMain() 11908 …reterr = GlmLinearBatch(pheno_batch, pheno_cols, pheno_names, cur_test_names, cur_test_names_x, cu… in GlmMain() 11930 const char* cur_pheno_name = &(pheno_names[pheno_uidx * max_pheno_name_blen]); in GlmMain()
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H A D | plink2_export.cc | 3687 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, uint32_t sampl… in ExportOxSample() argument 3711 write_iter = strcpya(write_iter, &(pheno_names[pheno_idx * max_pheno_name_blen])); in ExportOxSample() 9822 …nm, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uintptr_… 9956 …sii.sample_ids, sample_missing_geno_cts, sex_nm, sex_male, pheno_cols, pheno_names, sample_ct, pii…
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H A D | plink2_import.cc | 14470 char* pheno_names = nullptr; in Plink1DosageToPgen() local 14498 …pii, &sample_include, &founder_info, &sex_nm, &sex_male, &pheno_cols, &pheno_names, &raw_sample_ct… in Plink1DosageToPgen() 14644 write_iter = strcpya(write_iter, &(pheno_names[pheno_idx * max_pheno_name_blen])); in Plink1DosageToPgen() 15388 free_cond(pheno_names); in Plink1DosageToPgen()
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H A D | plink2_matrix_calc.cc | 5711 …ip, const uintptr_t* sex_male, const PhenoCol* pheno_cols, const char* pheno_names, const uintptr_… in ScoreReport() argument 6697 cswritep = strcpya(cswritep, &(pheno_names[pheno_idx * max_pheno_name_blen])); in ScoreReport()
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