| /dports/biology/bbmap/bbmap/pipelines/fetch/ |
| H A D | fetchPlastid.sh | 3 wget -q -O - ftp://ftp.ncbi.nih.gov/genomes/refseq/plastid/*genomic.gbff.gz > plastid.genomic.gbff.…
4 wget -q -O - ftp://ftp.ncbi.nih.gov/genomes/refseq/plastid/*genomic.fna.gz > plastid.genomic.fna.gz
5 gbff2gff.sh plastid.genomic.gbff.gz plastid.genomic.gff.gz
|
| H A D | fetchRefSeqClades.sh | 23 …ftp.ncbi.nlm.nih.gov/refseq/release/plastid/*.genomic.fna.gz | gi2taxid.sh -Xmx1g in=stdin.fna.gz …
|
| H A D | runRefSeqProtein.sh | 32 wget -q -O - ftp://ftp.ncbi.nlm.nih.gov/refseq/release/plastid/*genomic.fna.gz | gi2taxid.sh -Xmx1g…
|
| /dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/etc/ |
| H A D | qualifier_types | 82 …plastid:chloroplast" "mitochondrion:kinetoplast" "plastid:chromoplast" "plastid:cyanelle" "plastid…
|
| /dports/biology/emboss/EMBOSS-6.6.0/emboss/data/ |
| H A D | Etags.embl | 224 …leomorph,plastid,mitochondrion:kinetoplast,plastid:chloroplast,plastid:apicoplast,plastid:chromopl…
225 # FT 6.2 was plastid:protoplastid in FT5.0
|
| /dports/biology/bbmap/bbmap/resources/ |
| H A D | tRNA_consensus_sequence.fa | 10 >plastid
|
| H A D | 5S_consensus_sequence.fa | 10 >plastid
|
| H A D | p16S_consensus_sequence.fa | 1 >plastid
|
| H A D | 16S_consensus_sequence.fa | 71 >plastid
|
| H A D | 23S_consensus_sequence.fa | 129 >plastid
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/mod_adder_test_cases/ |
| H A D | rw672c.mods | 17 plastid-name deprecated_modifier
|
| H A D | rw672c.errors | 14 …owing modifier in a sequence file is discouraged and the information will be ignored: plastid-name.
|
| /dports/biology/ncbi-entrez-direct/ncbi-entrez-direct-14.9.20210423/ |
| H A D | esearch | 198 -location mitochondrion, chloroplast, plasmid, plastid
848 plastid )
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqfeat/ |
| H A D | gc.prt | 17 -- Added Balanophoraceae plastid genetic code 32
|
| H A D | seqfeat.asn | 1082 pgcode INTEGER OPTIONAL } -- plastid genetic code
1182 plastid (6) ,
1200 plasmid-in-plastid (24)
1255 plastid-name (22) ,
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqfeat/ |
| H A D | gc.prt | 17 -- Added Balanophoraceae plastid genetic code 32
|
| H A D | seqfeat.asn | 1082 pgcode INTEGER OPTIONAL } -- plastid genetic code
1182 plastid (6) ,
1200 plasmid-in-plastid (24)
1255 plastid-name (22) ,
|
| /dports/biology/ncbi-toolkit/ncbi/asn/ |
| H A D | seqfeat.asn | 1082 pgcode INTEGER OPTIONAL } -- plastid genetic code
1181 plastid (6) ,
1199 plasmid-in-plastid (24)
1254 plastid-name (22) ,
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/cleanup/test/test_cases/FixFeatureIds/ |
| H A D | comparison_1.raw_test.asn | 909 subtype plastid-name ,
912 subtype plastid-name ,
915 subtype plastid-name ,
918 subtype plastid-name ,
919 name "plastid" } ,
921 subtype plastid-name ,
924 subtype plastid-name ,
927 subtype plastid-name ,
930 subtype plastid-name ,
|
| H A D | comparison_1.raw_test.ref | 1036 subtype plastid-name,
1040 subtype plastid-name,
1044 subtype plastid-name,
1048 subtype plastid-name,
1049 name "plastid"
1052 subtype plastid-name,
1056 subtype plastid-name,
1060 subtype plastid-name,
1064 subtype plastid-name,
|
| /dports/biology/hyphy/hyphy-2.5.33/res/TemplateBatchFiles/TemplateModels/EmpiricalAA/ |
| H A D | modellist.ibf | 106 …ased. Inferred from 9,957 amino acid sites of 45 proteins encoded in the plastid genomes of Cyanop…
|
| /dports/biology/ncbi-toolkit/ncbi/sequin/ |
| H A D | macro.asn | 380 plastid-name (55) ,
439 plastid (6) ,
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/macro/ |
| H A D | macro.asn | 380 plastid-name (55) ,
439 plastid (6) ,
|
| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/macro/ |
| H A D | macro.asn | 380 plastid-name (55) ,
439 plastid (6) ,
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | create_defline.cpp | 351 case NCBI_GENOME(plastid): in x_OrganelleName()
1562 case NCBI_GENOME(plastid): in x_SetTitleFromNC()
2897 m_Genome == NCBI_GENOME(plastid) || in x_SetSuffix()
|